Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1123 ATGTGGTGGAGATCAGCATCATTTATCATGGACCGGCAACAGAACCGGATTCAAAACGACGCCGTATCAATGGAAAACGACGACGAAAACCCTAACAGCACCAATATCTCCGCTTACTATCAAACCAGGGCGGCGCACAACGCCGTCGTCACCACCGATTGGCTCGCGCAATCTCAGGCTGCTGCTGCCGCCGCCGCCGTTGCTCAAACAAGTGACGGTGAAATTGAAGGTGGAAAACTCGACGTGGTGTTGAATTCTGATAAAGCGTTGAGTGTGATTGATGTGTTTGATGGTTGGCGGAAACAGCCTCATTTGGCGGAGGCTGTTGCTGCTATTCGCGCATTGGCTTCTATTATTAGGTCAAGCAATGCTACAACTATGATGGAGCTTGAAATTGAGCTAAAAAAAGCTTCTGATTCTCTCAAATCGTGGGATGCAACCTCTATCTCCTTGACAGCAGGGTGTGACCTGTTTTTGCGATATGTAACAAGAACTTCTGCTTTAGAATATGAAGATTTTAACTCAGCTAAATCTCGCTTAATTGAACGTGCCGAGAAGTTTGGGGAAATCTCATACAAGGCTCGGAAAATTATTGCAATGTTGAGTCAAGAATTTATATTTGATGGCTGCACTATTTTGGTTCATGGTTTTTCTAGAGTTGTCTTGGAAATACTAAAACTAGCAGCACAAAATAAGAAACTGTTTCGGGTCTTCTGCACAGAGGGAAGACCAGATCGAACAGGATTACGGCTCTCCAATGAGCTGGCCAAGCTTGATGTTCCTGTGAAACTTCTGATAGACTCTGCAGTGGCATATTCTATGGACGAGGTGAATATGGTTTTTGTTGGTGCAGATGGAGTTGTTGAAAGTGGGGGTATAATTAACATGATGGGCACATACCAAATTGCATTGGTTGCACACAGTATGAATAAACCAGTTTATGTGGCTGCTGAAAGCTACAAGTTTGCTCGTCTTTACCCTCTTGACCAAAAGGATTTGGCCCCGGCATTGCGCCCCATTGATTTCGGTGTGCCGATTCCATCCAAGGTTGAGGTTGAAAGGTCTGCCAGAGATTACACTCCTCCTCAATATCTCACTCTGCTTTTCACTGATTTAGGTGTTCTTACTCCATCTGTGGTTAGTGATGAACTCATCCAACTATACTTATAG 1170 0.4453 MWWRSASFIMDRQQNRIQNDAVSMENDDENPNSTNISAYYQTRAAHNAVVTTDWLAQSQAAAAAAAVAQTSDGEIEGGKLDVVLNSDKALSVIDVFDGWRKQPHLAEAVAAIRALASIIRSSNATTMMELEIELKKASDSLKSWDATSISLTAGCDLFLRYVTRTSALEYEDFNSAKSRLIERAEKFGEISYKARKIIAMLSQEFIFDGCTILVHGFSRVVLEILKLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYSMDEVNMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDLAPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1123 389 Pfam Initiation factor 2 subunit family 104 377 IPR000649 GO:0044237
Lan16g1123 389 SUPERFAMILY NagB/RpiA/CoA transferase-like 105 388 IPR037171 -
Lan16g1123 389 Gene3D - 89 190 IPR042528 -
Lan16g1123 389 Gene3D - 193 389 IPR042529 -
Lan16g1123 389 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 29 389 - -
Lan16g1123 389 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 29 389 - -
Lan16g1123 389 Coils Coil 127 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1123 Lan-Chr16 18310922 18314372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1123 1 389 Eukaryotic Initiation Factors Gene Family AT1G53880 76.060 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1123 K03239 - gmx:100808764 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1123 16 18310922 18314372 Lan9g1037 9 17607224 17609213 PCT
Lan9g1037 9 17607224 17609213 Lan16g1123 16 18310922 18314372 PCT