Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1121 ATGGCAGCCGCCGCCACCGTTGCTCCGCCGCGCCAACTGTCGCAGAAGGAGGCTGACATCCAATTGATGTTAGCGGCCGAAGTCCATTTGGGAACCAAAAACTGTGATTTCCAAATGGAACGTTACATCTTCAAGCGCCGAAACGATGGTATTTATGTGATTAATCTCGGAAAGACATGGGAGAAGCTGTATCTGGCTGCTAGAGTGATTGTGGGGATTGAGAATCCGCAGGATATTATTGTTCAATCGGCCAGACCTTATGGACAGAGAGCAGTTCTCAAGTTTGCTCAGTACACTGGTGCCCATGCTATTGCTGGTAGGCACACTCCCGGTACATTTACTAATCAGCTCCAGACTTCATTCAGCGAGCCTCGCCTTCTCATTTTAACCGATCCACGAACTGATCATCAGCCTATTAAGGAAGCTGCTCTTGGAAATATTCCAACCATTGCATTTTGTGATACTGATTCACCGATGCGCTATGTTGACATTGGTATTCCTGCCAACAACAAGGGAAAACACAGCATTGGGGTTCTCTTTTGGCTTCTAGCAAGGATGGTATTGCAGATGCGTGGTACTATTCGCCCTGGCCTCAAATGGGATGTTATGGTGGATTTGTTCTTCTATAGAGAACCTGAGGAGGCAAAGCAGCAAGATGAGGATGAAGTGATACCAGGCGCAGATTATGCTATTCAAGACTTCAATACAACCGCTATTGGTGGCATTGCTGCCGATGGCCAGTGGCCTACCGCAGTCGATTCATCATGGACTGACTCTGTTCATCAACCTATTCCTGCAGTTCCCGGTGCTGTTACATGGACTGCTGCCCCAGATGCTGCTGGAGAATGGGGGGATTCTGTTGCACCTCCACAACAAATCCCTGCACCAGCAATTGAAAATGTCCAACCTTCTGGCTGGGAATGA 924 0.4838 MAAAATVAPPRQLSQKEADIQLMLAAEVHLGTKNCDFQMERYIFKRRNDGIYVINLGKTWEKLYLAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGVLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQDEDEVIPGADYAIQDFNTTAIGGIAADGQWPTAVDSSWTDSVHQPIPAVPGAVTWTAAPDAAGEWGDSVAPPQQIPAPAIENVQPSGWE* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1121 307 Hamap 40S ribosomal protein SA [rps-0]. 7 259 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lan16g1121 307 PANTHER 40S RIBOSOMAL PROTEIN SA 11 277 - -
Lan16g1121 307 MobiDBLite consensus disorder prediction 282 307 - -
Lan16g1121 307 ProSitePatterns Ribosomal protein S2 signature 1. 20 31 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 Gene3D - 19 223 - -
Lan16g1121 307 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 PANTHER 40S RIBOSOMAL PROTEIN SA 11 277 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lan16g1121 307 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Lan16g1121 307 TIGRFAM uS2_euk_arch: ribosomal protein uS2 16 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lan16g1121 307 Pfam Ribosomal protein S2 122 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lan16g1121 307 Pfam Ribosomal protein S2 23 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1121 Lan-Chr16 18289978 18293428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1121 1 283 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.379 7.53e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1121 K02998 - gmx:548014 518.85