Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1114 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGGTCTGCCCTTCTGGTGAAGCATAAGCATGAAAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCACACCAGGAGATGGAGCTCATCTCCAAAATGAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAGAAGGGTTGCTATGTTTGCATTATTATATGTTATTGTGAAGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTATGTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTCATGGCACTTGAGTACTTGCACAAGAACCATATTCTTCATCGTGATGTTAAGTGCTCGAACATATTTTTGACAAAAGATCGCAACATACGCCTTGGTGATTTTGGACTTGCCAAAAAGTTGACTTCAGATGATCTTACTTCCTCTGTTGTAGGAACTCCTAGCTACATGTGTCCTGAGCTCCTTGCAGATATACCTTACGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACCTCACTCAAGCCTGCATTCAAAGCATTTGATATAGAAGCACTGATTGTCAAGATCAGTAAGTCCATAGTGGCTCCGCTGCCATCAAAATATTCTAGTGCATTTCGAGGTCTCATTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCAGAGTTACTTGGGCACCCACATCTTCAACCTTATGTTCATAATATCCTTCTCAAAATCAACAGCCCTAGGCAAAGTACATTACCAGGTCATTGGCAACAATCCAACTATGTCAAGAAAACTAGATTCTTGAAACGAGAAGATGATTCTGTTTCCATCTATAAGGATAAGTGGCACTCTTTCAGCAATTGTCAGACTTCAAATCCTAGTGTATCTGGAGCAGAGCAAGATTCTCTATGCTCTACCCGAGAAATAGATTGTACCCCTGATTATTTGAATCAAAGATTAGCAGAACTGTGTGTTGGAGATAGTCATGAGGTGAAGTCAAACGTTAAGCCAGTTGTTTCCAGAACTTCTAGTATTGCAAAGACTCCAAGACTCACTTTATCGAAAGCTCCTGCCACCCACAAGAAATCAATAAAACACTCAAAGAATCATAAGGAGCTTCCTATATCACACAGTACCAAACAAACTGTCCATACAACTCGCAGAGCATCATTGCCATTGCCACAAAGTCGTGCCATTCAACAGCCTTCTCGAAGGGCCACTATTGCTTTATCTAGCAATGTAAATTCACCCAATATTTCAGTTAACGCACCTCATATTGATAAGATGGCAGAATATCCATTAGCATCATATGAAGATCAATTGTTTCCCATCAGTAGGGCTTCACCGACCTCTGCTCGTTGTTCCTCAAGCTTCCCTCCATGTAACAGCGATTCAACTATGATAGACAAATGCACAGTTGAGGTATGTAGTATACCACCCGTCAGGCCTAGTTGTTCTGATACTTGGCAGGGAATCAAGCGCAACATGATCAAGGAAAACAATGAGGAAAAAAGTGGCTCATATGATAAAAATGCAACTGCTGGAGCATCAAGCCACAACTCTTCAGACTTGCGCCGCCGACAGTTTGACACTTCATCCTTCCAACAAAGGGCCGACGCCTTGGAGGGGTTGCTTGAGTTTAGTGCAAGATTACTACAGCAGGAAAGGTATGACGAACTTGGGGTGTTGTTAAAACCATTTGGCCCAGGAAAGGTTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGTTAACACTTTCAACTAG 1851 0.4187 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKMRNPFIVEYKDSWVEKGCYVCIIICYCEGGDMAEAIKKANGVMFPEEKLCKWLVQLLMALEYLHKNHILHRDVKCSNIFLTKDRNIRLGDFGLAKKLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIEALIVKISKSIVAPLPSKYSSAFRGLIKSMLRKNPELRPSAAELLGHPHLQPYVHNILLKINSPRQSTLPGHWQQSNYVKKTRFLKREDDSVSIYKDKWHSFSNCQTSNPSVSGAEQDSLCSTREIDCTPDYLNQRLAELCVGDSHEVKSNVKPVVSRTSSIAKTPRLTLSKAPATHKKSIKHSKNHKELPISHSTKQTVHTTRRASLPLPQSRAIQQPSRRATIALSSNVNSPNISVNAPHIDKMAEYPLASYEDQLFPISRASPTSARCSSSFPPCNSDSTMIDKCTVEVCSIPPVRPSCSDTWQGIKRNMIKENNEEKSGSYDKNATAGASSHNSSDLRRRQFDTSSFQQRADALEGLLEFSARLLQQERYDELGVLLKPFGPGKVSPRETAIWLSKSFKVNTFN* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1114 616 PANTHER SERINE/THREONINE-KINASE NEK4 1 605 - -
Lan16g1114 616 Gene3D Transferase(Phosphotransferase) domain 1 86 321 - -
Lan16g1114 616 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1114 616 CDD STKc_Nek 3 258 - -
Lan16g1114 616 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lan16g1114 616 MobiDBLite consensus disorder prediction 379 418 - -
Lan16g1114 616 MobiDBLite consensus disorder prediction 403 418 - -
Lan16g1114 616 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lan16g1114 616 MobiDBLite consensus disorder prediction 523 554 - -
Lan16g1114 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lan16g1114 616 MobiDBLite consensus disorder prediction 532 547 - -
Lan16g1114 616 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1114 616 SUPERFAMILY Protein kinase-like (PK-like) 1 305 IPR011009 -
Lan16g1114 616 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1114 616 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1114 Lan-Chr16 18243454 18248964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1114 10 289 MAP Kinase Kinase Kinase AT1G53570 30.132 1.41e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lan16g1114 Pkinase 3.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1114 K08857 - gmx:100796019 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0840 4 10357390 10363103 Lan16g1114 16 18243454 18248964 LSH
Lan19g0605 19 11334044 11336915 Lan16g1114 16 18243454 18248964 LSH
Lan16g1114 16 18243454 18248964 Lan8g0279 8 4850875 4857567 PCT
Lan16g1114 16 18243454 18248964 Lan20g0697 20 5673686 5680664 PCT
Lan8g0279 8 4850875 4857567 Lan16g1114 16 18243454 18248964 PCT
Lan20g0697 20 5673686 5680664 Lan16g1114 16 18243454 18248964 PCT