Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1107 ATGAATAGTGTGATAGAGGTTGAAGAAGATTATAGTTCTGAGTTTGTGGAAGTTGATCCAAGTGGAAGATATGGCAGATACAATGAAATCCTAGGAAAGGGTGCTTTCAAAACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCATGGAACCAAGTTAAACTCTATGATTTTCTTCAAAGCCCTGAAGATCTTGAGAGACTATACTGTGAAATTCATCTTTTGAAAACATTGAAACATAGAAATATTATGAAATTTTACACATCTTGGGTGGATACTTCTAATAGAAATATCAACTTTGTTACTGAAATGTTCACTTCTGGTACTCTTAGACAGTATCGGCTAAAGCATAAGCGAGTTAACATCAGAGCTGTGAAGCATTGGTGTAGACAGATCTTAAGAGGACTTCTTTATCTTCATAGTCATGATCCCCCTGTAATTCATAGAGATCTCAAATGTGATAATATTTTTGTCAATGGAAATCAAGGAGAAGTTAAGATTGGTGATCTTGGCCTTGCAGCAATTCTACGAAAATCTCAGGCCGATCATTGTGTAGGAACGCCCGAGTTCATGGCCCCAGAAGTATATGAAGAGGCATATAATGAACTAGTTGACATATATTCCTTCGGGATGTGTGTATTGGAAATGGTTACATTTGAATATCCTTATAGTGAATGTAACCATCCAGCACAAATATACAAGAAAGTTATTTCTGGTAAAAAACCGGATTCTTTGTATAAAGTGAAGGATACGGAAGTGCGAGAATTTATTGAGAAATGCTTAGCAACCGTGTCTCTTAGGCTCTCTGCAAGGGAGCTTCTAGATGATCCTTTTCTTCGAAGTGACGATTACGAATATGATTTCGGGCCAGTAAATGGCAGAGCATGGGATCACAGTCCTCTAACAAGTCACCACCTCTTTGATCTTCATCAGAGCTATAATAACATCAGTGCCGAATACTCAAATGGTTTTAGTTTTGAAGGAGAATGGTGTAATACTCCAGCCGAGATTGAAGCTAGTGGAATCGAACTTTTCGAGTGCCATGATGATGAAGAATCCTCTGAAGATGTTGACATAAGCATCAAAGGCAAGAGGCACGATGATAATGGTGGCATCTTTTTGAGACTAAGAATCGCGGATAAAGACAGCCGTATACGGAATATTTATTTCCCATTTGATGTAGAGATGGACACAGCAATGTGTGTAGCATCTGAAATGGTTGCGGAACTCGACATTACCGATCAGGATGTTACCAGAATAGCGGATATGATAGATGGTGAAATTGCTTCCTTGGTTCCCAAATGGAGGTCGGGATCAGGAATCGAGGAAACTCCCAAGTCTGCAAATCATGGTTTCTGTCAGAATTGTGTGTCTAATCATACTTCCAATGGCTCTCTTATGGATTTTCTTTCACACGATCAAGACGGAAAGAACATACAATTTCTTCAATGCCATGGATGTGCTTCAATGCATGGACGGTTTGAGGAAATTACCTTCCAATCCAACGAGTATGACAAACATGATGGAGAGGATGCACCGAATGTTTCAACCAAATCACAGTGCTTGCAGTACTTGGAGTTATGGAATCAGCACGAAAGTCATGAACCGAATCCAATAGAGTCTAATCGAAGCCATTCTGATCAGCATTTAGATAAATCAGTATCAGAAGATGATCGAGGACAGGATGTTTGGGAAAACAAGTTAGCTCCCGATGCGCAAAACACCTTAAGAGATTTACCAGGAACTCGCTATTTCCCTACTATCCGTTCCTTATATTGCGGCCTCGAGGACGGGTACGAGAAAGAGAATACAACAAGAACTGAGATGATGGCTAAGAGCAAAATACAAAATGGAGTTAAGGGTACTTAA 1878 0.3951 MNSVIEVEEDYSSEFVEVDPSGRYGRYNEILGKGAFKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTSNRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSQADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPAQIYKKVISGKKPDSLYKVKDTEVREFIEKCLATVSLRLSARELLDDPFLRSDDYEYDFGPVNGRAWDHSPLTSHHLFDLHQSYNNISAEYSNGFSFEGEWCNTPAEIEASGIELFECHDDEESSEDVDISIKGKRHDDNGGIFLRLRIADKDSRIRNIYFPFDVEMDTAMCVASEMVAELDITDQDVTRIADMIDGEIASLVPKWRSGSGIEETPKSANHGFCQNCVSNHTSNGSLMDFLSHDQDGKNIQFLQCHGCASMHGRFEEITFQSNEYDKHDGEDAPNVSTKSQCLQYLELWNQHESHEPNPIESNRSHSDQHLDKSVSEDDRGQDVWENKLAPDAQNTLRDLPGTRYFPTIRSLYCGLEDGYEKENTTRTEMMAKSKIQNGVKGT* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1107 625 SUPERFAMILY Protein kinase-like (PK-like) 28 294 IPR011009 -
Lan16g1107 625 SMART serkin_6 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1107 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Lan16g1107 625 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 607 - -
Lan16g1107 625 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 607 - -
Lan16g1107 625 MobiDBLite consensus disorder prediction 539 566 - -
Lan16g1107 625 Gene3D Transferase(Phosphotransferase) domain 1 108 289 - -
Lan16g1107 625 CDD STKc_WNK 23 282 - -
Lan16g1107 625 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1107 625 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 376 430 IPR024678 GO:0004674|GO:0005524
Lan16g1107 625 Gene3D - 351 439 - -
Lan16g1107 625 Gene3D Phosphorylase Kinase; domain 1 8 106 - -
Lan16g1107 625 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g1107 625 MobiDBLite consensus disorder prediction 537 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1107 Lan-Chr16 18185952 18189777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1107 13 522 MAP Kinase Kinase Kinase AT3G22420 55.240 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lan16g1107 Pkinase 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1107 K08867 - gmx:100775959 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0843 4 10378082 10383278 Lan16g1107 16 18185952 18189777 LSH
Lan16g1107 16 18185952 18189777 Lan20g0690 20 5561265 5564486 PCT
Lan20g0690 20 5561265 5564486 Lan16g1107 16 18185952 18189777 PCT