Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1072 ATGTGTTTACCTGAGGGAGAAAGAGATAGAGTGAGAGACATGGCACTAGAAGCAGTAGTGTATTCACAAGAATACCCTTTTGGTTATTATGGATCAAACAAAAACATCTACAACAACAACAACTTCAACAACCTCGAAAAACATGAAGATGATGATGAACAAGTCTCAAATATTACATCTTTTCTACAAAACAATATAGAAAATAATTACCCTTATGGAGAATCATCATCATCATCAATGTTAATACCAAATATGAATAATATTGATGAAGTGCATGTTCCTAATAATGATGATGATGATGATATTCCAATATCTTCAGTGGTTTCTAGACCAAAGAGGAGAAGAGTGAAAAGCAGAAGGAACAAGGAAGATATTGAGAATCAGAGAATGACTCATATTGCTGTTGAACGTAACAGAAGAAAACAAATGAATGAGTATCTCTCTGTTCTTCGTTCTCTCATGCCTCAATCTTATGTTCAAAGGGGTGATCAAGCATCTATAGTTGGTGGTGCTATTAACTTTGTTAAGAAGCTTGAACAGAGGCTGCAATTTCTTGGTGCTAAGAAAGAAATAGTAGATGGTAAATTTGATGCAAATAAAAACATGTCTTTTTCTGATTTCTTCACTTTTCCACAGTACTCAACAAGTGCTACTTTCTGTGAAAATTCTGAACAAATGAGTGAAGTTAAGTCTGGTATTGCTGATATAGAAGTTACAATGGTTGAGACTCATGCAAATCTCAAAATAAGATCAAAGAAAAGACCAAAACAGCTTTTGAAAATAATCTCTAGTTTGCATGGAATGCATCTCACAATTTTGCATCTAAATGTTAATACCAATGGTGAAATTGTCCTCTATTGTCTCAGTGTTAAGGTTGAAGATGATTGTAACCTTGGATCAGTGGATGAGATAGCTAAAGCTGTATCCCAAATGCTGAATAGGATTCAACAAGATGCAATAATGTTGAATGATTAA 975 0.3385 MCLPEGERDRVRDMALEAVVYSQEYPFGYYGSNKNIYNNNNFNNLEKHEDDDEQVSNITSFLQNNIENNYPYGESSSSSMLIPNMNNIDEVHVPNNDDDDDIPISSVVSRPKRRRVKSRRNKEDIENQRMTHIAVERNRRKQMNEYLSVLRSLMPQSYVQRGDQASIVGGAINFVKKLEQRLQFLGAKKEIVDGKFDANKNMSFSDFFTFPQYSTSATFCENSEQMSEVKSGIADIEVTMVETHANLKIRSKKRPKQLLKIISSLHGMHLTILHLNVNTNGEIVLYCLSVKVEDDCNLGSVDEIAKAVSQMLNRIQQDAIMLND* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1072 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 192 IPR036638 GO:0046983
Lan16g1072 324 PANTHER MAX DIMERIZATION, MAD 14 321 - -
Lan16g1072 324 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 321 - -
Lan16g1072 324 SMART finulus 133 184 IPR011598 GO:0046983
Lan16g1072 324 Gene3D - 117 193 IPR036638 GO:0046983
Lan16g1072 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Lan16g1072 324 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1072 Lan-Chr16 17877154 17879440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1072 14 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.603 1.67e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan16g1072 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1072 - - pvu:PHAVU_007G181900g 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0861 4 10504341 10506167 Lan16g1072 16 17877154 17879440 LSH
Lan16g1072 16 17877154 17879440 Lan20g0665 20 5289046 5291374 PCT
Lan20g0665 20 5289046 5291374 Lan16g1072 16 17877154 17879440 PCT