Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1070 ATGGATCATCAAGGCCATGGCCAGAACCAAAATATGGGGGTTGTCGGTAGTGGAACTCAACTACCATACGGTTCTAATCCTTATCAGCAAAGCCAAATGATGGGGGCACCGGGGTCAGTTGTTACGTCTTCTGGTAACATGCAACCCACTCTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAACAACAACTTCAACAATTTTGGGCAAACCAATACCAGGAGATTGAGAAGGTTACTGATTTCAAGAATCACAGCCTTCCCCTTGCAAGGATCAAGAAGATTATGAAAGCAGATGAGGATGTCCGAATGATATCAGCTGAGGCACCGGTTATATTTGCAAGGGCATGTGAAATGTTCATACTAGAGTTAACCCTGCGCTCCTGGAATCACACCGAGGAGAACAAGAGGAGAACCCTCCAAAAGAATGACATTGCTGCAGCAATCACAAGGACTGATATCTTCGATTTCTTGGTTGATATTGTCCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCGTCAATCCCAAGAGGAACAATGCAGGTTGCAGGGCCTGCTGATTCACTTCCTTATATGTATATGCCACCTCAGCATGCACCCCAAGCTGGAGCTCCCGGCGTCATAATGGGCAAACCTGTGATGGACCCAAACATGTATGCTCAGCAACCTCATCCCTACATGGCGCCACAAATGTGGCCGCAGCCAAAAGACCAGCGACCATCATCTCCAGATCATTAG 747 0.4699 MDHQGHGQNQNMGVVGSGTQLPYGSNPYQQSQMMGAPGSVVTSSGNMQPTLAYQHIHQQQQQQLQQQLQQFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMQVAGPADSLPYMYMPPQHAPQAGAPGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPKDQRPSSPDH* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1070 248 MobiDBLite consensus disorder prediction 1 21 - -
Lan16g1070 248 SUPERFAMILY Histone-fold 58 161 IPR009072 GO:0046982
Lan16g1070 248 MobiDBLite consensus disorder prediction 222 248 - -
Lan16g1070 248 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 248 - -
Lan16g1070 248 Gene3D Histone, subunit A 50 167 IPR009072 GO:0046982
Lan16g1070 248 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 248 - -
Lan16g1070 248 Pfam Core histone H2A/H2B/H3/H4 55 152 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1070 Lan-Chr16 17859176 17862041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1070 1 235 CCAAT-HAP5 Transcription Factor Family AT1G08970 64.979 1.28e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lan16g1070 CBFD_NFYB_HMF 5.3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1070 K08066 - gmx:100527803 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0867 4 10544194 10547236 Lan16g1070 16 17859176 17862041 LSH
Lan2g0298 2 2529249 2531279 Lan16g1070 16 17859176 17862041 LSH
Lan16g1070 16 17859176 17862041 Lan8g0307 8 5171351 5173713 PCT
Lan16g1070 16 17859176 17862041 Lan20g0661 20 5225634 5227978 PCT
Lan8g0307 8 5171351 5173713 Lan16g1070 16 17859176 17862041 PCT
Lan20g0661 20 5225634 5227978 Lan16g1070 16 17859176 17862041 PCT