Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1061 ATGTCAGATTCAGAGTTGAATCCAGAAATTTTCAGTGTTCGAATTGTTTCCATTGATTATTACATGGCACCGCCAATTTCAGAATTGGATATATGTTATAGCACTTTCCATGGTGGAAAAGTGAAAGAGGTTCCTGTAATAAGAGTTTATGGTTCTACTCCTTCTGGCCAAAAAACTTGTTTGCATATACATAAAGCTTTACCCTATATGTATGTGCCGTGTTCAGATATAACACTTCAACTTGACCAAGAAGGTGATGCATACACATGTAAAGTAGCTGCTTCTCTTGAGAAAGCTTTGAAGCTTAAAGGTGGTGCTGGTTTCACAAGACAACATGTACATGGTTGTAGCCTTGTACGAGCAAGGAAATTTTATGGTTATCATTCATTCGAGGAGTTATTTGTGAAGATATACCTATATTATCCACAAGACGTCGCCCGTGCAGCTAATCTTCTCTTGGAGGGTGCTGTTCTTGATAAAACTTTACAGCCTCATGAATCACACATTCCCTTTGTTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTTATTTGCACTTATCAAAGATGAAGTTCCGCCTTCCCATACTAGACTCTTCTCAGAAGAAATTAAATATCAATAACCATCATAGAAGGGCAGATCCAGGGGCTGATGTATGGTTAGATGCAAAGGTGTGGATATCTTCTATGGTCCCGCCTGATTGGACGTGGCCAACCACTAGTGATTTTGGTGCTTCATCAAATGATAAGGCTCACTGCCCTAGACGTCAAAGTATCTGTGAGCTTGAGGGGGATGCTTCTGTAGATGAGATTCTTAATCAGAATTTTAAGATATATTCATCTCTCTCACAGACATGCTCAGATGTCAAAATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCAGAAAAGGTCTGGGAACCATGAGGCTACTATGCCTCCTGATCCTGGGAAACCACTCCCAGAAGATGTTATGAAATTTCTTCATGGTAGTCTTGACTTTGAGCAAAAACTTCTTCGATTGTGCAGTGAAGCTGAAACTTCTTTATCTTTGACTCCTTCTCAAAAGGATTTGAGAGAAACAGACATAATAGGCTTGGCATCACCACCATGTTCATTATCTGAAGGTGCCAACTTCCATGAGGAAGAGACTGACACCAGTCTCAAATTATTGACTGTTAATGAAATGCAATCATCTGAAATGAATGGAATGTTGGACACAAAGGCTGCAGATAAGGAAGCACAAAATCTTCTCAAGTGGCTTGCAACTTCTCAAGCTGTGGAGGATATAAACTCTGATGATGAGCTTGCTTGTGAAATGATCTTGAGTCCCTTCTTACCTGCTTCAACTATTGATAAGGTGCTGGAGGAAGTGAATATGGCTTATGAAAGCGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATGTGCAAAAACCTTCTAGTCCATCTGATCTCACTCATCCTACTGAGGCTCCATCAATCAGTATGATGCCCCATGTTGGTCCTGCTGATGAGCTCTCAAGTCCATGCACTAGTTTGGCTGGAACCTCTACTGCACTAGAGATAAATAGTAAATCCAAAATGGCATCTGAGTTCCATGTACTGCACAGTACTGACACAAGTACAGCTAGTAAAGTTAAAAGGACTAAACAATGGGGGTCATTGCCTTTTTTCACACCCAATAAGGTTAATAATGATGAAGAACTTGCTGATTTGCGTGTGACTCATCTATTTGAAAGCGAATCTGGAGATTCTACTGACTCAGATTACTCGATGAGAAGTGACATTAGAAATAGTGCTTGTATTAGAAGATATGTGGGCAAGAGTGCTTCAGAATTAAAAGAAGGAAACAAATTGGTTAACCGCTCTTTACGTGACTTGATGAGGCGAAAGAGATCCCATCGAGTTGAACAAGCTGAATGCGAGTCTGGAAGAACTAAAAAGATTCTTGTAGACAGGCATGAGGGATCAAACACATGCCTTTGGAAAAAACAGCTGGATTTCAATACAATGCAAACTGATGGAGATGAAACAGAACTTCAGAATAATTTTGATCTTAAACCTAGCAATCATGGTAATTTAATGTGTGAGAAACCACATCCATCTGGCAGTGATAGTTTCTTACGGGCTACTGAGGCTAGTAATCCAAAAGATGATTGTTTTGGTCAACATGAAACGGACAGTGTAGAAACAAGTTCAGTATTAAGGGACCCCACAAATAGAAGTTCTTTAGCTTGCCAAGGACCATGCAATCCTGAAAATACACATTTGACTGATTCCATAGACCACTCAGAGGGTTGCAGGGGTAAAAACCTTATGTTTGATACAGCATATGCAAAATCTGTAGCTTCTGATGCCTATATTCCAAAATCCTTTTCAGATGTTCTGTTGAGAGCTGATGCTGATAATAGAATCAGTGGCGCTGAGGCATGTCAGCAATCTGACTGTGCAGATTCCAGATGTGTACACTGTGCATGCATTGTGGAACATGATCAGACAAAATATTTTGAGAATGCTATGGGCAAAAGTGCTGCAAGTGACATGCAAGTACTACTTACTGAAAATCAAAAGCATGGTGAAAATTTGATGCGTGAGACTATTGGCTCAGAACCCATTGTTGATGACATGAAGGGTAATGACATGGTGAAATTAACGGGTATAACCATAGGCAAGATAACCCCTTTGGCTGATAAAAAACTTGAAAGTTTCAAGTCCTTGCCAACCATCTCTAATACCCGTTTTTCTTTGGATGAGGAAGCTTGTGATGAAATGCCAGGGAATGGTCTAGATGTTTTTCTCCCCTTTTCTGCAAAGGAGTCCCGGAAGGAGATGAAAACTTGGAAGGAGATGAAAACTTGGAACAAGTTTGTTACAATTGCAGCCCCTAGGTCTCACGGGAAAGAGGGTGTTTCCACTCACTATCAAAATGATGGCTCTCCCCTGTACCTATTAACACCTAATATTTTGCCTCCTTCCGCAGTTAGTGTGCATAGATGGCTAGATGAGAGAGATCAAAAGTTTCAAGAAACTGATGCTGAGGACAAGTTTGTACCTGAATGTGCTTCTGGGCCTCCTCTTGGGCCTAAGCTGTATCAAGATGCTGGTGCAGAAAAGAAATCTCCACACAGTAGTGGGGGACAAACAGAACGAGTGAAGGCATGCCTAGATGGCTCACAAGATATTTCTCAGATATCAGGCCCCGATAGGAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCCAGTGCTGGATGTGGACAACAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCAAGAGGAGAGTTTTTACCTGATCCTCAGTTTGATGGCATTAACATTGTAGCTCTAGGTTTTCAGAATGATAATGAGCCTACTGTTGAAGTTCTTGTTCTTTTGCGTAGTAAATTTGAACCTTGTCATAGAAGTTTTGATGGCTTATCAGGGTGCAAAGTATTGGTCTTCACTGATGAAAAGCACTTGTTAAAAGAATTTATCAAGTGTGTCTCTTCATCTGACCCAGATATTTTGATGGGTTGGGAAATTCAAGGGGGTTCTCTTGGTTTTCTTGCGGAGAGGGCTTCACATCTTGGTTTAGGATTACTTAATAGTTTGTCTCGCACTCCATGTGAGTCTTGGGTTGCTTCTGAAGTTACAAAAACTTCTGGAAAAGCTATCTTGGAACTGGAAATTTCTGATAGCCCTACTTTAGATTCTTTTGTACAAGAAGATTCAATAATTGAGGATGAATGGGGACGAACGCATGCAAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAGCTGAATTTATATTCAATTGAAGCTGTAGCTGAAGCGGTACTGCGGCGGAAAATCCCTTTAATTCACCACAAAGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACAAGCAAGATATCAGTGTATCAAGTATGTTACGGAGAGATCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTCTTTTCTGTTCTCTCTCGAGGCTCACAATATCGTGTTGAATCCATGTTTTTGAGGTTGGCTCATACACAGAATTATCTTGCTATCTCCCCTGGAAAGCAACAGGTTGCTTCTCAACCAGCCATGGAGTGCCTGCCTCTAGTAATGGAACCAAAATCAGGATTTTATTCAGATCCTGTGGTTGTATTGGACTTCCAGTCTCTTTATCCATCCATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGTAAAGTTGTGGCATCAAAGGCTAACACACTTGGGGTTAGTTCATTTTCACCAGAGCAGCATGTTCTGCAGAATTTGAAAGATCAAATCTTGCTGACTCCAAATGGTGTTATGTTTGTACCATCCAAGATTCGCAGAGGTGTGTTGCCCCGCTTATTGGAAGAAATCTTGTCAACTAGAATAATGGTGAAACAGGCAATAAAAAAACTGGCTCCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCGAGACAACTTGCTTTGAAGCTCATATCAAATGTGACTTATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCTGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCTGCACGAAAAGTGGAATGCTAAAGTTATTTATGGAGACACTGATAGTATGTTTGTCCTCCTTAAAGGACGTACTGTCAAAGAATCCTTCCAAATTGGAAATGAGATTGCTTCTGCTATCACTGCTATGAATCCCAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCTTGTTTCCTCCTTACTAAGAAGCGATATGTCGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTAGTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACATGTGATGCAGTTGCAAAGATAATGGAGAAGTCTTTGAGACGTTTTTTTGAGCATCAGGATTTATTTGAGGTAAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCAGGCAGATTCTCCCTTAAAGATTTCGTCTTTGCTAAGGAGGTTCGCTTGGGTACATACAGTGCTAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGGGTTGATCGTAGGGCAGGACCACGTTATGCTGAGAGAATACCTTATGTTGTAGTCCATGGAGAGCCCGGTGCCCGACTTGCTGATATGGTTGTCGATCCATTGGAAGTTTTGGCAATTGATTCCCCATATAGAATAAATGATTTATATTACATCAATAAACAAATAATACCAGCTCTACAGCGGGTTTTTGGGCTGCTCGGTGCTGACCTTAACTACTGGTTTTCAGAGATGCCCCGCCCTATTAGGGTAGCTTCTGTAAAGCATACTTTCACTTCAAATTCCCATCGAAAGCGGATTGATTATTACTACCTCTCAAAACATTGTGTCCTTTGTGGTGAGTTGGTCCAGGCGTCGGCTCATTTATGCAATCAATGTTCTGAAAATGGAGGAGCTGCTATGACTGCACTTATTAGTAAAACTTCGAAGTTGGAGCAGGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGTGGCGGGGACCGGCTTCTGGAAAATAGCGTGAAGTGCACGTCGATTTCATGCTCGGTGTTCTACGAGAGGCGGAAAATTCAGAAAGAACTACTGGCTGCCACCCATGTTGCTGCAGATAAAGGCTTCTATCCAAGATGCATGATAGAATGGTTCTGA 5880 0.4128 MSDSELNPEIFSVRIVSIDYYMAPPISELDICYSTFHGGKVKEVPVIRVYGSTPSGQKTCLHIHKALPYMYVPCSDITLQLDQEGDAYTCKVAASLEKALKLKGGAGFTRQHVHGCSLVRARKFYGYHSFEELFVKIYLYYPQDVARAANLLLEGAVLDKTLQPHESHIPFVLQFLVDYNLYGMGYLHLSKMKFRLPILDSSQKKLNINNHHRRADPGADVWLDAKVWISSMVPPDWTWPTTSDFGASSNDKAHCPRRQSICELEGDASVDEILNQNFKIYSSLSQTCSDVKMVQSLVPIWEEQQKRSGNHEATMPPDPGKPLPEDVMKFLHGSLDFEQKLLRLCSEAETSLSLTPSQKDLRETDIIGLASPPCSLSEGANFHEEETDTSLKLLTVNEMQSSEMNGMLDTKAADKEAQNLLKWLATSQAVEDINSDDELACEMILSPFLPASTIDKVLEEVNMAYESESQKECQDILDSIDDVQKPSSPSDLTHPTEAPSISMMPHVGPADELSSPCTSLAGTSTALEINSKSKMASEFHVLHSTDTSTASKVKRTKQWGSLPFFTPNKVNNDEELADLRVTHLFESESGDSTDSDYSMRSDIRNSACIRRYVGKSASELKEGNKLVNRSLRDLMRRKRSHRVEQAECESGRTKKILVDRHEGSNTCLWKKQLDFNTMQTDGDETELQNNFDLKPSNHGNLMCEKPHPSGSDSFLRATEASNPKDDCFGQHETDSVETSSVLRDPTNRSSLACQGPCNPENTHLTDSIDHSEGCRGKNLMFDTAYAKSVASDAYIPKSFSDVLLRADADNRISGAEACQQSDCADSRCVHCACIVEHDQTKYFENAMGKSAASDMQVLLTENQKHGENLMRETIGSEPIVDDMKGNDMVKLTGITIGKITPLADKKLESFKSLPTISNTRFSLDEEACDEMPGNGLDVFLPFSAKESRKEMKTWKEMKTWNKFVTIAAPRSHGKEGVSTHYQNDGSPLYLLTPNILPPSAVSVHRWLDERDQKFQETDAEDKFVPECASGPPLGPKLYQDAGAEKKSPHSSGGQTERVKACLDGSQDISQISGPDRKSSFTPLSQIGFRDPASAGCGQQLTLLSIEVLAESRGEFLPDPQFDGINIVALGFQNDNEPTVEVLVLLRSKFEPCHRSFDGLSGCKVLVFTDEKHLLKEFIKCVSSSDPDILMGWEIQGGSLGFLAERASHLGLGLLNSLSRTPCESWVASEVTKTSGKAILELEISDSPTLDSFVQEDSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSIEAVAEAVLRRKIPLIHHKVLTKWFSSGPGQARYQCIKYVTERSKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGKQQVASQPAMECLPLVMEPKSGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQNLKDQILLTPNGVMFVPSKIRRGVLPRLLEEILSTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTVKESFQIGNEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPSFDAKGIETVRRDTCDAVAKIMEKSLRRFFEHQDLFEVKTYLQRQWKRILSGRFSLKDFVFAKEVRLGTYSARISSLPPAAIVATKAMRVDRRAGPRYAERIPYVVVHGEPGARLADMVVDPLEVLAIDSPYRINDLYYINKQIIPALQRVFGLLGADLNYWFSEMPRPIRVASVKHTFTSNSHRKRIDYYYLSKHCVLCGELVQASAHLCNQCSENGGAAMTALISKTSKLEQEMQHLVAICHHCGGGDRLLENSVKCTSISCSVFYERRKIQKELLAATHVAADKGFYPRCMIEWF* 1960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1061 1959 CDD POLBc_zeta 1373 1821 - -
Lan16g1061 1959 Gene3D DNA Polymerase, chain B, domain 1 29 195 - -
Lan16g1061 1959 Pfam DNA polymerase family B 1366 1813 IPR006134 GO:0000166|GO:0003677
Lan16g1061 1959 Gene3D Palm domain of DNA polymerase 1411 1656 IPR023211 -
Lan16g1061 1959 Gene3D Helix hairpin bin 1491 1551 - -
Lan16g1061 1959 CDD DNA_polB_zeta_exo 1097 1347 - -
Lan16g1061 1959 MobiDBLite consensus disorder prediction 733 747 - -
Lan16g1061 1959 Gene3D - 1667 1835 IPR042087 -
Lan16g1061 1959 SUPERFAMILY DNA/RNA polymerases 1412 1826 IPR043502 -
Lan16g1061 1959 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1952 IPR030559 GO:0006281|GO:0016035|GO:0019985
Lan16g1061 1959 SUPERFAMILY Ribonuclease H-like 35 1372 IPR012337 -
Lan16g1061 1959 SMART polmehr3 1117 1604 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lan16g1061 1959 MobiDBLite consensus disorder prediction 481 497 - -
Lan16g1061 1959 Pfam C4-type zinc-finger of DNA polymerase delta 1858 1931 IPR025687 -
Lan16g1061 1959 Pfam DNA polymerase family B, exonuclease domain 1095 1295 IPR006133 -
Lan16g1061 1959 Pfam DNA polymerase family B, exonuclease domain 54 196 IPR006133 -
Lan16g1061 1959 MobiDBLite consensus disorder prediction 706 747 - -
Lan16g1061 1959 MobiDBLite consensus disorder prediction 481 500 - -
Lan16g1061 1959 Gene3D - 1130 1408 IPR036397 GO:0003676
Lan16g1061 1959 PRINTS DNA-directed DNA-polymerase family B signature 1425 1438 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lan16g1061 1959 PRINTS DNA-directed DNA-polymerase family B signature 1534 1546 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lan16g1061 1959 PRINTS DNA-directed DNA-polymerase family B signature 1590 1598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lan16g1061 1959 MobiDBLite consensus disorder prediction 1017 1058 - -
Lan16g1061 1959 ProSitePatterns DNA polymerase family B signature. 1592 1600 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1061 Lan-Chr16 17788580 17802991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1061 39 195 Core DNA Replication Machinery Family AT5G63960 26.543 5.71e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1061 K02350 - gmx:100777934 2841.99