Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1060 ATGGAAGTAGATGATGATTACGAGGAGTATGTGCCTGTGGCCAAACGCCGTGCCATGGAAGCTCAGAAGATTCTTCAACGCAAAGGGAAGGTTGCTGCTGTCGCCGATGCTGATTTGGAGAAAGAACAAGTAGTTGAAACTAAACCTACCCTTCTAGAGAAGGCGTCGCAGTTGAAGCGAGAACAACCTGAGATTAGTGTCACGGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGAGAATTTGTCTGATAGGAAAACTCTTATGTCTGTTCGTGAGTTAGCTAAGGGAATCACTTATACTGAACCTTTGCCTACAGGGTGGAAGCCGCCTTTGCAGATTAGAAGGATGTCAAAAAAGGGGTGTGATTTGATTCGAAAGCAGTGGCATATAATAGTTGATGGTGATAACATTCCACCGCCAATTAAGAATTTTAAGGACATGAGGTTTCCGGAGCCGGTTTTGAACAAGTTGAAAGTCAAGGGGATTGTGCAACCAACGCCAATTCAGGTGCAAGGCCTTCCTGTTATCTTATCCGGGCGAGATATGATTGGGATTGCATTTACAGGTTCGGGAAAGACTCTGGTCTTTGTGCTGCCGATGATTATGATGGCAATGCAGGAGGAAATTATGATGCCTATTGTTCCTGGAGAGGGTCCTTTCGGATTGATCATTTGTCCGTCGAGGGAACTAGCTAGGCAGACTTATGAAGTGATTGAAGATTTCTTGACACCTTTGAAGGAAGCTGGATATCCGGAGCTTAGGCCTTTGCTTTGTATCGGTGGAATAGATATGAGATCACAGCTTGAGATTGTGAAGAAGGGTGTTCATATTGTTGTTGCTACTCCTGGGAGATTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTAACAACTGCAGGTATTTAACGTTAGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGACGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTTTTATTTTCTGCCACTATGCCAACCAAGATTCAGAACTTTGCTAGAAGCGCTTTGGTGAAACCGATTATTGTCAATGTGGGACGTGCAGGTGCAGCAAATCTCGATGTCATCCAGGAGGTAGAGTATGTTAAGCAAGAAGCAAAAATTGTTTACCTCCTCGAGTGCTTGCAAAAAACACCGCCGCCAGTTTTAATATTTTGTGAGAATAAGGCTGATGTTGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCGGTGGCTATTCACGGAGGGAAGGATCAAGAGGAGAGAGAGTATGCTATTTCCGCTTTTAAGGCTGGAAAGAAAGATGTTTTGGTTGCAACTGATGTTGCATCTAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAATTATGACATGCCAGCTGAAATCGAAAATTATGTTCATCGGATTGGACGAACCGGAAGATGCGGCAAGACCGGTATAGCAACAACGTTTATAAACAAGAATCAAAGTGAGACAACATTGCTTGATTTGAAACATCTTTTGCAAGAAGCAAAACAGAGGATTCCCCCAGTTTTAGCTGAGCTGAATGATCCGATGGAAGATAATGAAGCAATCACAGACATAAGTGGGGTCAAAGGATGTGCATTTTGTGGTGGTCTTGGTCATCGAATCCGTGATTGTCCCAAATTAGAACATCAGAAGAGCGTCGTGATTGCAAATAATAGAAAAGATTATTTTGGATCTGGAGGTTATAGAGGGGAAATTTGA 1767 0.4244 MEVDDDYEEYVPVAKRRAMEAQKILQRKGKVAAVADADLEKEQVVETKPTLLEKASQLKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLQIRRMSKKGCDLIRKQWHIIVDGDNIPPPIKNFKDMRFPEPVLNKLKVKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEDFLTPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLNNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNEAITDISGVKGCAFCGGLGHRIRDCPKLEHQKSVVIANNRKDYFGSGGYRGEI* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1060 588 Coils Coil 65 85 - -
Lan16g1060 588 SMART ultradead3 162 373 IPR014001 -
Lan16g1060 588 Gene3D - 110 362 IPR027417 -
Lan16g1060 588 Coils Coil 500 520 - -
Lan16g1060 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 358 IPR014001 -
Lan16g1060 588 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 568 - -
Lan16g1060 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 504 IPR027417 -
Lan16g1060 588 SUPERFAMILY Retrovirus zinc finger-like domains 546 567 IPR036875 GO:0003676|GO:0008270
Lan16g1060 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Lan16g1060 588 CDD SF2_C_DEAD 370 498 - -
Lan16g1060 588 Pfam Helicase conserved C-terminal domain 382 489 IPR001650 -
Lan16g1060 588 ProSiteProfiles Zinc finger CCHC-type profile. 547 562 IPR001878 GO:0003676|GO:0008270
Lan16g1060 588 Gene3D - 368 530 IPR027417 -
Lan16g1060 588 Pfam DEAD/DEAH box helicase 167 346 IPR011545 GO:0003676|GO:0005524
Lan16g1060 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 529 IPR001650 -
Lan16g1060 588 PANTHER BNAA06G38640D PROTEIN 8 568 - -
Lan16g1060 588 CDD DEADc_DDX41 154 359 IPR044113 GO:0000398|GO:0003724|GO:0005524
Lan16g1060 588 SMART helicmild6 408 489 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1060 Lan-Chr16 17782362 17785000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1060 141 528 Eukaryotic Initiation Factors Gene Family AT3G19760 31.298 2.51e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1060 K13116 - gmx:100814127 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0876 4 10655544 10657868 Lan16g1060 16 17782362 17785000 LSH