Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1045 CGTAATTTTGCAGGTGATATACATGGTCAGTACCAAGACTTACTGAGGGTATTTGAATATGGAGGCTACCCTCCTGCAGCAAACTACTTGTTCTTGGGGGATTATGTCGACAGAGGGAAGCAAAGTTTGGAGACTATATGTTTGCTTTTGGCCTACAAAATAAGATATCCGGACAAAATTCATCTCTTGAGAGGAAACCATGAAGACGCAAAGATAAACCGGATTTATGGTTTTTATGATGAATGTAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTCACTGACTGCTTTAACTGTTTGCCGGTAGCTGCACTCATCGATGGCAAAATACTTTGTATGCATGGGGGTCTCTCTCCGGAATTACAAAATTTGAATCAGATAAAGGAGATTCAAAGGCCTACTGAAATTCCGGATAATGGTCTCCTATGTGATCTGCTTTGGTCTGATCCTGATTCTAGCATTGACGGCTGGGCGGACAGTGACCGAGGAGTTTCATGTAACTTTGGATCTGATGCAGTCACTGAGTTTTTGGATAAAAATGATCTTGATCTCATTTGCAGAGGTCATCAGGTTGTAGAGGATGGATATGAGTTTTTCGCTAAACGGAGATTAGTCACGATATTTTCTGCTCCAAATTATGGCGGGGAGTTTGATAATGCTGGTGCATTGTTGAGTGTTGATGAATCTCTCGTGTGCTCCTTCGAGATATTAAAACCTATCGATAGAGGATCTTCATCAAAGATGAATCTTAAGAAGCCTCCTAAACTCGGAAAAGTTTAG 783 0.4087 RNFAGDIHGQYQDLLRVFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIHLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDGKILCMHGGLSPELQNLNQIKEIQRPTEIPDNGLLCDLLWSDPDSSIDGWADSDRGVSCNFGSDAVTEFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPIDRGSSSKMNLKKPPKLGKV* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1045 260 Pfam Calcineurin-like phosphoesterase 4 192 IPR004843 GO:0016787
Lan16g1045 260 SMART pp2a_7 2 242 IPR006186 GO:0016787
Lan16g1045 260 SUPERFAMILY Metallo-dependent phosphatases 4 243 IPR029052 -
Lan16g1045 260 Gene3D - 2 250 IPR029052 -
Lan16g1045 260 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 8 4 256 - -
Lan16g1045 260 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 4 256 - -
Lan16g1045 260 PRINTS Serine/threonine phosphatase family signature 29 56 IPR006186 GO:0016787
Lan16g1045 260 PRINTS Serine/threonine phosphatase family signature 62 86 IPR006186 GO:0016787
Lan16g1045 260 PRINTS Serine/threonine phosphatase family signature 96 122 IPR006186 GO:0016787
Lan16g1045 260 PRINTS Serine/threonine phosphatase family signature 125 152 IPR006186 GO:0016787
Lan16g1045 260 PRINTS Serine/threonine phosphatase family signature 182 202 IPR006186 GO:0016787
Lan16g1045 260 PRINTS Serine/threonine phosphatase family signature 204 220 IPR006186 GO:0016787
Lan16g1045 260 ProSitePatterns Serine/threonine specific protein phosphatases signature. 63 68 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1045 Lan-Chr16 17658320 17659942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1045 4 185 Calmodulin-binding Proteins AT5G63870 32.258 2.24e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1045 K06269 - gmx:100805030 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0886 4 10824620 10827419 Lan16g1045 16 17658320 17659942 LSH
Lan2g0280 2 2378816 2381787 Lan16g1045 16 17658320 17659942 LSH