Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1041 ATGTCTTCCATTTCTACTTCCATTTCACACCAAAAAAACATGACCTTGTTTAATTTCTTTTTCATTCTCATAATGCTTTTAGTTTTACCTTCATCATTTGATGCTTTCTCAAATGAAAACCCTTCAAACCTTAAAACACAAGACATGCATGCAATGATTGCACAAGCATGCATGAACATTGAAAACCAAAACTCATGCCAAACCAATATCCAAAATGAGTTAACCAAATTTGGTTCTCCAACCCCAACTTCAATTCTAAGTGCTGCAATGAGAACCACACTCAATGAAGCCATTGGTGCCATTGATAAAATCTCAAAGTTCACAACATTATCCATAAGCTACCGTGAACAAATAGCCATAGAAGATTGTAAAGAGCTACTAGATTTCTCAGTTTCTGAGTTAGCATGGTCCTTAGGTGAAATGAGAAGAATAAGAGAAGGTGATAACAATGTTCAATATGAGGGTAACCTTGAAGCTTGGTTAAGTGCTGCATTGAGTAACCAAGACACATGCATTGAAGGGTTTGAAGGAACAGATAGAAAACTTGAAAGTTACATTAGTGGAAGTTTAACACAAGTTACACAACTTATAAGTAATGTTTTATCATTATATACACAATTGCATAGCTTACCCTTTAGGCCTCCAAGGAAGAATAGCAACAACAACAACAACAAGAACAACACACTAATAACAAAACATGATGAAAGTTGGAAATTTCCTGAATGGATGAGTGAGAATGATAAAGAACTTCTGAAGTCTATGCCACATGGTGCACATGATGCTGTTGTTGCATTAGATGGGAGTGGAAATTATAGAACAATCAATGAAGCTGTTAATGCAGCTCCAAGTCATAGTAATAAGAAGTATGTTATATATGTGAAGAAAGGGATTTATAAGGAGAATGTTGATATGAAGAAGAAGATGACTAATATTATGCTTGTTGGTGATGGTATTGGAAGAACCATTATCACAAGTAATAGGAATTTCATGCAAGGATGGACCACTTTTAGAACTGCAACACTTGCTGTATCCGGGAAGGGTTTCATTGCGAAGGACATATCATTTCGTAACACAGCAGGAGCAATTAACCACCAAGCAGTAGCTCTAAGAAGTGGTGCAGATCTATCTGCATTTTATAGTTGTAGTTTTGAAGGGTACCAAGACACTTTATACACTCATTCTCTTAGGCAATTTTATAGAAATTGTGACATTTATGGTACTATCGACTTCATATTTGGTAACGCCGCGGTTGTTTTGCAACAATGTAACATTTTTCTTAGACTCCCCCTACATGGTCAATTCAATGCAATCACGGCGCAAGGCCGAGTCGATATTAACCAAAACACTGGAACTTCCATTCACAATTGTAGCATCACGGCCGCGGATGACTTAGCCGCTAGTAATGACACGACGCAAAGTTATCTGGGTAGGCCATGGAAGCAATATTCGCGCACGATTTATATGCAAAATTTTATGGATAGTTTGATCAATCCTTTGGGGTGGAAAGAATGGTCAGGAGATTTTGCTTTGGATACACTTTATTATGCCGAATTTGATAATGAAGGACCAGGAGCTGATACTAGTAATAGGGTTACTTGGAGTGGTTATCATGTGATCAATAACACAGATGCAAATGATTTCACAGTTTCTAATTTCATTTTTGGTGATGCTTGGCTACCTATAACTGGAGTACCTTACTATGGTGGTTTACTTTGA 1716 0.3706 MSSISTSISHQKNMTLFNFFFILIMLLVLPSSFDAFSNENPSNLKTQDMHAMIAQACMNIENQNSCQTNIQNELTKFGSPTPTSILSAAMRTTLNEAIGAIDKISKFTTLSISYREQIAIEDCKELLDFSVSELAWSLGEMRRIREGDNNVQYEGNLEAWLSAALSNQDTCIEGFEGTDRKLESYISGSLTQVTQLISNVLSLYTQLHSLPFRPPRKNSNNNNNKNNTLITKHDESWKFPEWMSENDKELLKSMPHGAHDAVVALDGSGNYRTINEAVNAAPSHSNKKYVIYVKKGIYKENVDMKKKMTNIMLVGDGIGRTIITSNRNFMQGWTTFRTATLAVSGKGFIAKDISFRNTAGAINHQAVALRSGADLSAFYSCSFEGYQDTLYTHSLRQFYRNCDIYGTIDFIFGNAAVVLQQCNIFLRLPLHGQFNAITAQGRVDINQNTGTSIHNCSITAADDLAASNDTTQSYLGRPWKQYSRTIYMQNFMDSLINPLGWKEWSGDFALDTLYYAEFDNEGPGADTSNRVTWSGYHVINNTDANDFTVSNFIFGDAWLPITGVPYYGGLL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1041 571 SMART PMEI_2 48 203 IPR006501 GO:0004857
Lan16g1041 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Lan16g1041 571 Gene3D - 256 570 IPR012334 -
Lan16g1041 571 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 25 567 - -
Lan16g1041 571 SUPERFAMILY Pectin lyase-like 258 569 IPR011050 -
Lan16g1041 571 Pfam Plant invertase/pectin methylesterase inhibitor 52 203 IPR006501 GO:0004857
Lan16g1041 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 208 IPR006501 GO:0004857
Lan16g1041 571 CDD PMEI-like_4 66 207 - -
Lan16g1041 571 PANTHER PECTINESTERASE 25 567 - -
Lan16g1041 571 Pfam Pectinesterase 260 556 IPR000070 GO:0030599|GO:0042545
Lan16g1041 571 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Lan16g1041 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 208 IPR035513 -
Lan16g1041 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 208 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1041 Lan-Chr16 17624771 17631541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1041 21 570 Carbohydrate Esterase AT3G05620 53.559 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1041 K01051 - gmx:100810565 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1041 16 17624771 17631541 Lan8g0332 8 5356012 5359196 PCT