Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1038 ATGGTAAGGGGTGGAAAAGTTAGTGGCAAAAGCAATTTCAGGTTAAGGGTCCGGTCAAAAAAAGGTGGCGGTTCTGATGATTCCGATGAGGACTATGTGATTTCGGACGAAGGTGGAGATGTGTCTGATTGTCCAGAGGATTATGGTTTAGATGAATGTGCATCAGAGGAAAGTTTTGATGGTTTCCTAGAGGAGGAGGAAGGAACTCGAAGAGTTAGGAAATTCAACAGATCAAAGGCCAAAAATAGCATTTGTGGTCTGAGGGGAAATGCAAGTAAAATCTCACGAAAGAGAAGTAGAATTACATATGCAGAACAACTAGAACTACAACAACAAAAAGAACGAGAGGGGGGTGGAGATGAGGTGGAGAATAATGAAGATGAGGACGAGGATTTCAATTATAATGATGATGAGGGGGAGGAGGAGGATGAAGATGAGGACGATGATTTCAATTATGATGATGATGAGGAATTTACACCAGAGGAAGAATATTGCTCAGACATGGAAGAAGAAACAAGGGGGAGAAATAAGAAAAATAATGGTGTGAAAATGGGCAAGAAGATTTTGAAAAAAAGGGTTTCTGTGACTTCTACCAGAGATCGAAACATGGAGGATGAATATGAGGATTTAAATTATGATGACAGTGATGATGATGATGACGAATTTACACTAGAGGAAGAATACTGCTCAGACGTGGAAGAGGAAACAAGGGGGAGAAAGAAGAAAAATAGTGTGAAAATGGGCAAGAAGGTTTTACGTAGAGGGGTTTCCACATCTTCTACCAGAGGTCGGAAAAGGAGGAGATCTAGAGCTTCAAAGAAACCCTCGAGAAAGAAAAGAAGAAAGAATGGAGGGTTAAGGAGGAAAGTTAGAAGTAGGGTTAGGAGAAGAAGGGTTCTCCTTGAAGGTTCCAATTCCGATTCAGATCATGTGTCCGGATCACCGGGTTATAAGTTTACTGTCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGGAATTGTGTAGAAGTTTAAGAAGGAACTTGAGGAGTTCTTCCATTCAAATGAAAAATGCAGAGGTTAGAGTACATGAAGATCTACAACATCAATGGAGGCCTCCAGGCTGGAAGGGCAAGGAAAAGATAGAGGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAGCGAGATGGGAAAGCAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGGGTACGGGGAGTACTAAATTGTTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGGCGAAGGTGGAGTCTCGGTGCCCTCTGTGTAAGCAGAGATTTAAAACCATCACTAAACCTGCACGGTCAACAGCAGGGCTTGATTTAAGAGAATCTGTGATACAGGTGCCCGAATGTGATCAGGTTTATCAACCCTCTGAAGAAGAACTGATGAGATATATCGATCCATATGAGTCTGTTATTTGTTCAGAGTGCCATCAAGGCGGAGACGATGGCCTCATGTTACTCTGTGATATGTGTGATTCCCCTGCTCACACATATTGCGTTGGTCTTGGGCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGATGCAGACCAGTTGCTGTGGGATCCTCAAGTTCTCAAGTTCAATTACCTGTGGCTCCAAGGATGACAATCCAAAGCCCACCTGTTAGACCGTCACCTGTTCATGTACCAGAAAGTATAGACTTTAACTTGATTTCTTCACCTCGTACACCGTTCAGTGAAGTATTTGGGCATCTTTCATCTTCTAGATTTTCTGGAATTATTGAAGCAGCTTCCCCAGTATCAGGAGGAGGGACTTTATCAGAGAGACACGGGATACTCTGTCAATTTCAGCAGCTACCTTCAGTAGACAGAATTACTTCTACAACTGGCAGTACTAACGGTATTCCTGTTACCACTTCAACAAGTAACTTGTGTAGCTCACAAATTGATCAAAGTAGGGAAACAGCCATTGAACATCCACGGACACTGGATGTGGGAACATCATACCACACATTCTTTGAGGAGAGACTACGCAACAATGTCTCTCCATCAATGCAGAATGGAGATCCCTTCTCCATGAGAATAAGCATTTCAAGAAGGCCGGTGTCTCAGGATTCAACAACTATGTTTACCGACAAGCCCGTGAATGAGGTGCTATGGCCTGTACATGTGGAAATGCCTGGCATATCAGATTTTGGACCAGTCTGTCAGTTCAGCAGCAGATCAAACATGGTCACAGATGGTAATTTGTCCATGGCAATCAAAGAAGAGAGTAACTTCCCCCTTGTAAAGGAGCAGCTGCAATCAATGGTTAAAAGCCACCTGAAGAGATTTTCTAGAGATGTTGATGTAGGCTATAGTATTTTTAAGGACATTGCAAGGAGTTCTACACACACCATATTAGCAGCTTGTGGTCTTGAGCACAAAAGGAGTGAGGTTTGCACTGTTCCCCCACCATGCATCTGTCCCCACATTGAACTAATGGGTGGTGGAGAGAAGAGTCTAATTCAAGGTTGCTGTTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAAAGGGTTTTGGAGACAAGAATGTCCTTACAGTTAAGATTAGACCTTTAG 2631 0.4268 MVRGGKVSGKSNFRLRVRSKKGGGSDDSDEDYVISDEGGDVSDCPEDYGLDECASEESFDGFLEEEEGTRRVRKFNRSKAKNSICGLRGNASKISRKRSRITYAEQLELQQQKEREGGGDEVENNEDEDEDFNYNDDEGEEEDEDEDDDFNYDDDEEFTPEEEYCSDMEEETRGRNKKNNGVKMGKKILKKRVSVTSTRDRNMEDEYEDLNYDDSDDDDDEFTLEEEYCSDVEEETRGRKKKNSVKMGKKVLRRGVSTSSTRGRKRRRSRASKKPSRKKRRKNGGLRRKVRSRVRRRRVLLEGSNSDSDHVSGSPGYKFTVSEEEREQVREAKELCRSLRRNLRSSSIQMKNAEVRVHEDLQHQWRPPGWKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEENKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFKTITKPARSTAGLDLRESVIQVPECDQVYQPSEEELMRYIDPYESVICSECHQGGDDGLMLLCDMCDSPAHTYCVGLGREVPEGNWYCDGCRPVAVGSSSSQVQLPVAPRMTIQSPPVRPSPVHVPESIDFNLISSPRTPFSEVFGHLSSSRFSGIIEAASPVSGGGTLSERHGILCQFQQLPSVDRITSTTGSTNGIPVTTSTSNLCSSQIDQSRETAIEHPRTLDVGTSYHTFFEERLRNNVSPSMQNGDPFSMRISISRRPVSQDSTTMFTDKPVNEVLWPVHVEMPGISDFGPVCQFSSRSNMVTDGNLSMAIKEESNFPLVKEQLQSMVKSHLKRFSRDVDVGYSIFKDIARSSTHTILAACGLEHKRSEVCTVPPPCICPHIELMGGGEKSLIQGCCSSCFDSFVGDVVKRVLETRMSLQLRLDL* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1038 876 MobiDBLite consensus disorder prediction 121 167 - -
Lan16g1038 876 MobiDBLite consensus disorder prediction 98 120 - -
Lan16g1038 876 MobiDBLite consensus disorder prediction 259 296 - -
Lan16g1038 876 SUPERFAMILY RING/U-box 399 448 - -
Lan16g1038 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 465 IPR013083 -
Lan16g1038 876 ProSiteProfiles Zinc finger PHD-type profile. 490 539 IPR019787 -
Lan16g1038 876 PANTHER F18C1.6 PROTEIN 1 199 - -
Lan16g1038 876 PANTHER F18C1.6 PROTEIN 144 865 - -
Lan16g1038 876 MobiDBLite consensus disorder prediction 207 231 - -
Lan16g1038 876 ProSitePatterns Zinc finger RING-type signature. 419 428 IPR017907 -
Lan16g1038 876 MobiDBLite consensus disorder prediction 96 324 - -
Lan16g1038 876 MobiDBLite consensus disorder prediction 29 51 - -
Lan16g1038 876 ProSiteProfiles Zinc finger RING-type profile. 400 442 IPR001841 -
Lan16g1038 876 Pfam Ring finger domain 399 442 IPR001841 -
Lan16g1038 876 MobiDBLite consensus disorder prediction 1 51 - -
Lan16g1038 876 PANTHER F18C1.6 PROTEIN 144 865 - -
Lan16g1038 876 PANTHER F18C1.6 PROTEIN 1 199 - -
Lan16g1038 876 MobiDBLite consensus disorder prediction 366 388 - -
Lan16g1038 876 CDD RING-HC_Topors 400 442 - -
Lan16g1038 876 Pfam PHD-finger 492 538 IPR019787 -
Lan16g1038 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 557 IPR013083 -
Lan16g1038 876 SUPERFAMILY FYVE/PHD zinc finger 465 538 IPR011011 -
Lan16g1038 876 Coils Coil 322 356 - -
Lan16g1038 876 SMART ring_2 400 441 IPR001841 -
Lan16g1038 876 SMART PHD_3 492 537 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1038 Lan-Chr16 17574258 17578220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1038 487 536 C2H2 Transcription Factor Family AT3G01460 46.154 3.23e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan16g1038 PHD 3.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1038 - - mtr:MTR_7g112410 807.364