Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1031 ATGTCTAACACTAGCAACAATGTGGGTGGGGTTGATAACACATTCAGAAGAAAATTTGACCGAGAAGAGTATTTGGAACGTGCTCGTAAGCGTGAGAAGGAGGAGGAGGAGGGCTCTCGATCCAAATCTAAAGCTAAAGGTCCTCTCGTGCAGAGGAAACCCTTGAAACATAGAGATTATGAAGTGGACCTCGAATCCCGCTTGGGCAAGACTCAGGTTGTTACACCAGTTGCACCACTAAGTCAGCAGGCAGGATACTACTGCTCAGTATGTGAATGTGTGGTAAAGGACTCTGCGAATTATTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGTGTAGAACGTGCTTCTCTTGACCAGGTTCGGGAACGATTTGAAGTTCTTAAGAAACGTAAAGATCATGGAAGTTTCACAGAGCAAGATTTTGATGAACGGATATTAAAACAGCAACAAGAAGAGGAAGAAAGAAAGCGATTACGTCGTGAAAAGAAAAAAGAAAAGAAGGAGAAGGCTATTGAAGAACCTGAAATGGATCCTGATGTTGCAGCCATGATGGGGTTTGGTGGTTTCGGTTCATCGAAGAAGTGA 609 0.4302 MSNTSNNVGGVDNTFRRKFDREEYLERARKREKEEEEGSRSKSKAKGPLVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFEVLKKRKDHGSFTEQDFDERILKQQQEEEERKRLRREKKKEKKEKAIEEPEMDPDVAAMMGFGGFGSSKK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1031 202 MobiDBLite consensus disorder prediction 28 43 - -
Lan16g1031 202 MobiDBLite consensus disorder prediction 161 202 - -
Lan16g1031 202 Pfam Zinc-finger of C2H2 type 86 110 - -
Lan16g1031 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 3 202 IPR040107 GO:0000398|GO:0005681
Lan16g1031 202 Gene3D Classic Zinc Finger 80 118 - -
Lan16g1031 202 MobiDBLite consensus disorder prediction 28 56 - -
Lan16g1031 202 MobiDBLite consensus disorder prediction 161 184 - -
Lan16g1031 202 SUPERFAMILY beta-beta-alpha zinc fingers 81 127 IPR036236 -
Lan16g1031 202 Coils Coil 154 181 - -
Lan16g1031 202 SMART ZnF_U1_5 83 117 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1031 Lan-Chr16 17519093 17522162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1031 4 148 C2H2 Transcription Factor Family AT3G05760 80.000 2.13e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan16g1031 zf-C2H2_jaz 1.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1031 K12848 - gmx:100527057 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1031 16 17519093 17522162 Lan2g0268 2 2241014 2244244 LSH