Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1024 ATGGCATCATCGTCATCATCTGTGATGATATTAAACCCAGTAACGAACACGGATCGGTCACGTGACTCAAAGAGGAAAAAGAAGAAGAAATCTCAGCTGAAACACCACCAACAAGATTCAAATACCCACACAAAATGGAAATCTCAAGAACAACAACAAATCTACTCCTCCAAGCTCCACCAAGCCTTAACCGCACCATCACAGCCACGCGGCGGGAAAGCCGTTCGCGAAGCTGCTGATAGAGTCCTCGCCGCCACGGCGAAGGGGAGGACACGGTGGAGCCGGGCCATACTAACGAACCGGCTGAAGCTCAAGTTCAGGAAGCAAAAGAACAATAGGCAGAGATCGGTCGCCGGAGCAACCGGGACTAGCCGGTGGAAGAAGCCACGTGTGAGTGTGTTAAGGCTGAAGGGGAAGGGATTACCGGATATGAAGAAGAAAGTAAGGTTCCTTGGACAGTTAGTACCAGGTTGTCGGAAAGAACCGTTACCGGTGATTCTAGAAGAAACCATTGATTATATACCTGCGCTTGAGATGCAGGTTAGAGCCATGACCGCTCTTTTCAACCTTCTCTCTGCCTCTGGTGACACCTCAGCATCCACGTCAGCACCACCTACTTGA 621 0.5024 MASSSSSVMILNPVTNTDRSRDSKRKKKKKSQLKHHQQDSNTHTKWKSQEQQQIYSSKLHQALTAPSQPRGGKAVREAADRVLAATAKGRTRWSRAILTNRLKLKFRKQKNNRQRSVAGATGTSRWKKPRVSVLRLKGKGLPDMKKKVRFLGQLVPGCRKEPLPVILEETIDYIPALEMQVRAMTALFNLLSASGDTSASTSAPPT* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1024 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 194 IPR036638 GO:0046983
Lan16g1024 206 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 10 203 - -
Lan16g1024 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Lan16g1024 206 CDD bHLH_AtIBH1_like 133 187 IPR044549 GO:0006355
Lan16g1024 206 MobiDBLite consensus disorder prediction 1 17 - -
Lan16g1024 206 MobiDBLite consensus disorder prediction 1 55 - -
Lan16g1024 206 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 10 203 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1024 Lan-Chr16 17448030 17449206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1024 41 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 51.366 1.84e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1024 - - gmx:100803765 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1024 16 17448030 17449206 Lan8g0353 8 5646909 5657952 PCT
Lan16g1024 16 17448030 17449206 Lan20g0612 20 4835993 4836898 PCT
Lan16g1024 16 17448030 17449206 Lan4g1313 4 21942300 21943194 PCT
Lan8g0353 8 5646909 5657952 Lan16g1024 16 17448030 17449206 PCT
Lan20g0612 20 4835993 4836898 Lan16g1024 16 17448030 17449206 PCT
Lan4g1313 4 21942300 21943194 Lan16g1024 16 17448030 17449206 PCT