Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1020 ATGAGTGGTGAGGGTTCGGGAGAATTCGGGTTCAATAATTACCAGCAGAAACAGCAGCAGCAGCAACCGCAATTGTCTGGTCAGAAACGAGGGTTTTCATTCTCTGGCCGCGGAGGTTCGCCCGAACGTTTTGATAGAGGAACTTTTGCCAAACTTTTTGTTGGATCTGTTCCTCGTACAGCCACCGAAGAAGATATTCGGCCTTTGTTTGAGCAACATGGGAATGTGATTGAAGTTGCACTGATCAAAGATAAAAAAACTGGGCAACATCAAGGTTGTTGTTTTATAAAGTATGCTACTTCTGAAGACGCTGACCAGGCGATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTATTGGTCCAATCCAAGTGCGGTATGCTGATGGTGAACGGGAACGCCTCGGTGCAGTAGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACTGTAAAGGAAGTTGAGGAAATATTCTCAAAATATGGGCGGGTAGAAGATGTCTATCTTATGCGTGATGAGAAGAAACAAAGCCGTGGATGCGGTTTTGTGAAGTACTCAAATCGAGATATGGCACTGTCTGCTATAAATGCATTAAATGGGATCTATACAATGAGGGGTTGTGATCAACCACTAATTGTCCGGTTTGCTGATCCTAAGAGACCTCGTCAAGGAGATTCCAGGGGTCCGACATTTGGAGATCCAGGATCAGGTCCTAGATTTGACCCACCAGGTGCAAGATTTCCTCCCAATACTAGTGTTCCTATGGGTGATCGAATGCCTCCCCCAAATGCATGGCGTCCTATGCATCCCCCAAATATGGGACCATCCTCTAATGCCGATAATCATTGTATGGAGCCTCAATGGTTTCCAAGATCTAGTGACACGACATTGCCTATAAATGCAGGTGGTCCTATGACTGGCATGGGAGACCCCATAGATGGTCGTTTTAAGGTTGAGTCTTTGACATCAATGTCACAACAGAATTTCAACCAGCCTGTACCACATATTCCACCACTCAACCAAGAAATATCACCATTGCAGAAACCTGTTCAATCATCTCAGGAGTTGCCACCTGCTCACCACCTGCACCCTGAACCTCAAGCACCAATGCCCTACTCCCAAATTCCATCACAATCATCTCTTCGGCAAGTTGGCCAACCACAACTTCCTCTCTCTGCTGGCAAGCAAGTACTTGGCACAAATGGACAATTTCCAACTTCTCAGTCACAAATTCAGCAGAGTGCTTTGCCTGCTTCAAATCCTCGGGTTCTTCATGATACCAATTTCCAACCTAATACAACATTTACTACGAATAAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAACCTCATCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACATCAAAAACAGACTTTACAAGCAAGTCTTCATTCGTCACAGCAAGTGTTCTCCCAGCTTCAACAGCAAGTACAGATGATGCAACCATCTAGTCAAACATCAACAATGCAGCAAAATGCAGCAATTGCTAACAAGCAGCAGGCCATCAATTCCACAGCTGCACCCATTGGAGACGTGCCTTCATCCACATCTGCTACTATTGTTGCACCTGGGATAAGCCAGAACACGACTCTTGCTAAATGTAATAATTGGACAGAGCATTTATCTCCTGAGGGCTTCAAGTACTTCTACAATAGTGTGACTGGTGAGAGTCGGTGGGAGAAACCTGAGGTGTTGGCATTATCTGAAAAGCAACAGCAAAGGCTACCTGGTCAACACTCACAAACTCAGTCACAGCCTTCAACAATATCTGCCCATCAAGTTCCACAAATGCAACAGGCTCAGCCTCAAAGTGCCTTCCAAGGACAGATTCTCCACCAGCAACAAATGCAGCAGCCTTCTTTGTCATCTTCGTTCCAGGCGTATGGAGTCACAGCTAATCAAAATGTTCAGGATGTTGGTTACAAACAATTACAGGCATCAGCCCTTTCTGCTGGTGATCCTGGACGCTACTCACAGGGTATTCACACTACACAAGATTGGATGTGGAGAAACAAGCCAGCAGGTGTTTGA 2079 0.4565 MSGEGSGEFGFNNYQQKQQQQQPQLSGQKRGFSFSGRGGSPERFDRGTFAKLFVGSVPRTATEEDIRPLFEQHGNVIEVALIKDKKTGQHQGCCFIKYATSEDADQAIRALHNQHTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSNRDMALSAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPTFGDPGSGPRFDPPGARFPPNTSVPMGDRMPPPNAWRPMHPPNMGPSSNADNHCMEPQWFPRSSDTTLPINAGGPMTGMGDPIDGRFKVESLTSMSQQNFNQPVPHIPPLNQEISPLQKPVQSSQELPPAHHLHPEPQAPMPYSQIPSQSSLRQVGQPQLPLSAGKQVLGTNGQFPTSQSQIQQSALPASNPRVLHDTNFQPNTTFTTNKQQVPPSVQQQPLQPHQQSPSQLAQMLSHQKQTLQASLHSSQQVFSQLQQQVQMMQPSSQTSTMQQNAAIANKQQAINSTAAPIGDVPSSTSATIVAPGISQNTTLAKCNNWTEHLSPEGFKYFYNSVTGESRWEKPEVLALSEKQQQRLPGQHSQTQSQPSTISAHQVPQMQQAQPQSAFQGQILHQQQMQQPSLSSSFQAYGVTANQNVQDVGYKQLQASALSAGDPGRYSQGIHTTQDWMWRNKPAGV* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1020 692 SMART ww_5 548 580 IPR001202 GO:0005515
Lan16g1020 692 SUPERFAMILY RNA-binding domain, RBD 16 135 IPR035979 GO:0003676
Lan16g1020 692 Gene3D - 44 136 IPR012677 -
Lan16g1020 692 MobiDBLite consensus disorder prediction 1 33 - -
Lan16g1020 692 CDD WW 552 579 IPR001202 GO:0005515
Lan16g1020 692 SMART rrm1_1 142 217 IPR000504 GO:0003723
Lan16g1020 692 SMART rrm1_1 51 127 IPR000504 GO:0003723
Lan16g1020 692 Pfam WW domain 552 578 IPR001202 GO:0005515
Lan16g1020 692 MobiDBLite consensus disorder prediction 375 464 - -
Lan16g1020 692 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 209 IPR000504 GO:0003723
Lan16g1020 692 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 114 IPR000504 GO:0003723
Lan16g1020 692 ProSiteProfiles WW/rsp5/WWP domain profile. 553 580 IPR001202 GO:0005515
Lan16g1020 692 SUPERFAMILY WW domain 552 581 IPR036020 GO:0005515
Lan16g1020 692 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 21 649 - -
Lan16g1020 692 MobiDBLite consensus disorder prediction 331 464 - -
Lan16g1020 692 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 131 IPR000504 GO:0003723
Lan16g1020 692 MobiDBLite consensus disorder prediction 277 303 - -
Lan16g1020 692 ProSitePatterns WW/rsp5/WWP domain signature. 553 578 IPR001202 GO:0005515
Lan16g1020 692 MobiDBLite consensus disorder prediction 1 45 - -
Lan16g1020 692 MobiDBLite consensus disorder prediction 220 318 - -
Lan16g1020 692 MobiDBLite consensus disorder prediction 587 629 - -
Lan16g1020 692 Gene3D - 137 229 IPR012677 -
Lan16g1020 692 Gene3D - 549 591 - -
Lan16g1020 692 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 221 IPR000504 GO:0003723
Lan16g1020 692 PANTHER TRANSFORMER-2-RELATED 21 649 - -
Lan16g1020 692 CDD RRM2_FCA 142 221 IPR034645 -
Lan16g1020 692 MobiDBLite consensus disorder prediction 244 272 - -
Lan16g1020 692 MobiDBLite consensus disorder prediction 586 629 - -
Lan16g1020 692 SUPERFAMILY RNA-binding domain, RBD 141 242 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1020 Lan-Chr16 17383512 17392899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1020 49 247 Eukaryotic Initiation Factors Gene Family AT1G49760 25.893 3.28e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1020 - - gmx:100798390 875.544