Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1004 ATGGTAACGGAAGCGGAAATCATATGTCAGAAGAGTATTCCGAGCATGTTAGACGTAAAGTATCATCTCTGCGTGGCGCAAGAACACAACGTTAAAGTTGAGATTTCACCAACCACCCCTTCTGTGCAAATCTTTAGCCAAGTTCGCGTTTCCTCTGAATCCTTTTCTACTGAAGCTTCTTCCTTTGAATCCGCTGTGGCTTGCTCTGAGATCATCAAAGATTCCATTATGGAGACTCCTGCAACCAAGTTTAGCCCGAGTGTGCGTTCTGCTAGCTATGCTGAAATTGGACCAAGGGTATCCATGGAAGATGAGCACATACGGATTGATGATCTAGCTGCCCATCTTGGATTTGTGTTCCAGTGCCCAATACCAAGCGCATTTTACGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTAATTATGTTAAGAGGAATGCCATGAGATTATTTTTTGAAGATGCTAATATGCTGCGGTCATATGATACTGATGCCTTTTTTATGAAGAAGCTGGAGGAGTCTCATCGAAAAGCTTTTTTGCGGGCAGACCTTGCCTTGGCTGATGAGCAAAGTGTTAATAGTTCATGTGGGACTACAGCATTGACTGCCCTTGTACTTGGAAGGCATTTGCTGGTTGCCAATGCCGGTGACTGTCGGGCAGTACTTTGCAGAAGAGGTAAAGCTGTTGAGATGTCTCAAGATCACAGGCCAAGTTATTTACCAGAACGGAGGAGAGTGGAGGAGCTAGGTGGCTTCGTTGATGATGGATATCTCAATGGTTATCTTTCAGTAACACGTGCACTTGGGGATTGGGACTTGAAAAATCCACTTGGTGCCGCATCCCCTCTTATTGCTGATCCAGATATTCAAATGGTTACATTAACAGAGGAGGACGAGTTCTTGATCATTGGATGTGATGGGATATGGGATGTAATGTCCAGTCAAGTTGCAATTAGTCTTGTTCGTCGTGGATTAAGAAGGCATGATGACCCACATCAATGTGCCAAGGAACTTGTCAAGGAAGCACTGCGCCTAAACACGGCAGATAATCTCACTGTGATTGTTATATGCCTGTCCCCAGTCGAAAGTATTGCAGAATCATGTCCGCCACAAAGACGAAGATTTAAAGCTTGCAGCCTGTCTGAAGAAGCCCGAAATAGATTGAAGAGCTTGGTAGAAGGGAATTGA 1191 0.4492 MVTEAEIICQKSIPSMLDVKYHLCVAQEHNVKVEISPTTPSVQIFSQVRVSSESFSTEASSFESAVACSEIIKDSIMETPATKFSPSVRSASYAEIGPRVSMEDEHIRIDDLAAHLGFVFQCPIPSAFYAVFDGHGGPDAANYVKRNAMRLFFEDANMLRSYDTDAFFMKKLEESHRKAFLRADLALADEQSVNSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGKAVEMSQDHRPSYLPERRRVEELGGFVDDGYLNGYLSVTRALGDWDLKNPLGAASPLIADPDIQMVTLTEEDEFLIIGCDGIWDVMSSQVAISLVRRGLRRHDDPHQCAKELVKEALRLNTADNLTVIVICLSPVESIAESCPPQRRRFKACSLSEEARNRLKSLVEGN* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1004 396 Pfam Protein phosphatase 2C 99 351 IPR001932 -
Lan16g1004 396 SMART PP2C_4 79 357 IPR001932 -
Lan16g1004 396 SMART PP2C_SIG_2 104 359 IPR001932 -
Lan16g1004 396 ProSiteProfiles PPM-type phosphatase domain profile. 87 359 IPR001932 -
Lan16g1004 396 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 383 - -
Lan16g1004 396 SUPERFAMILY PP2C-like 84 361 IPR036457 -
Lan16g1004 396 CDD PP2Cc 89 359 IPR001932 -
Lan16g1004 396 ProSitePatterns PPM-type phosphatase domain signature. 128 136 IPR000222 GO:0043169
Lan16g1004 396 Gene3D - 73 363 IPR036457 -
Lan16g1004 396 PANTHER PROTEIN PHOSPHATASE 2C 1 383 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1004 Lan-Chr16 17230112 17234077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1004 1 395 PP2C-type Phosphatase Gene Family AT1G48040 56.281 6.56e-147 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1004 K14803 - gmx:100775577 655.595