Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0991 ATGGAAGTAGAAGATGAGTGGGATTTAAGCACAGAAGAACTCGATTCTCTCGAAAGAGACGCTTTTCAAAAAATTGCTCAATTACGCCATTCCCAATCTCAATCTCAACCTTCTCCTTCTCTTTCTTCTCAACCCCTTTCTACACCTTCTCCTACTACATACCCAAACCCTTTCCCAGATTCACGTCCTCAAAAGGTTGAAAAATTGTCTCAAGGTTCTAGAGCATTACCCACGTCATCTAAATCAAAAGGGTCAAGCCAAGATGTACCTTCAAAAGAATTGCCAAAGCTATCGGTCAAATTTTTTCTTCATTCAAGTGGAAGTGTTGCAGCAAAATTTCAATATGAGCAGGTAGTAGTTGCTGCTTTTCGCAAAATCTCTAGAGCTTCATGGAATGCAAAAGAAAGGTTATGGATGTTCCCTCTATCTTCTTTGTCAGAAGCAGAAAAGATACTTGGAGAAATACCTGGATATAATGTTCAGGTAGAGAACATTGATCCCTTAGCACACCGGGCCATTACTGCTGCATCTGCTGTTCCAGATCTTCGAGATCGATATGACAAGATCCCTAGCTATGTCGAAACAAAGCTTTTGCCATTTCAGCGAGACGGTGTAAGGTTTATATTGCAGCATGGAGGACGTGCTCTTTTAGCAGATGAAATGGGATTAGGGAAAACTTTGCAGGCTATTGCCGTAGCTGCATGCGTTCAAGACTCATGGCCTGTTCTCATAATTGCACCATCTTCTTTGCGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCCGATATACTCGTTGTCTTGTCTCAAAGTGGTGGATCAAATAGAGGAGGCTTCAATATAGTATCTTCAAGTGGCAAAAGTAGAATTCACCTGACTGGACTGTTCAACATTATCTCATATGATTTGGTGCTAAAGCTACAGAATATGCTTATAGCATCAGACTTTAAGGTTGTGATTGCAGATGAATCACACTTTCTAAAAAATGCTCAGGCTAAAAGGACTACTGCTTCTCTTCCGGTTATAAAGAAAGCTAAATATGCAATTTTGCTTAGTGGAACTCCTGCTTTATCTCGACCAATTGAATTATTCAAGCAGTTGGAAGCCTTGTATCCTGATGTATACAAGAATGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAGTCTTCGGTGTTTTTCAAGGTGCAAGTAACCATGATGAATTGCACAATTTGATGAAGGCAACAGTAATGATTCGTAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTGAAGCGCAGACAACAAGTTTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCTTGAGCTGGAGATGGTAAAAGCCAAAATTAAGGCATCTAAATCAAAAGACGAAGCTGAATCACTTAAGTTCACTCAAAAGCATCTTATTAACAAGATATATACTGATTCTGCAGAGGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTGATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAACCAATGATAGATTCGATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATAAGGATTGATGGTGGTACACCTGCTGCATCAAGGCAACAATTGGTGACAGAGTTCCAGGAAAAGGATTCCATAAAGGCAGCAGTGTTATCTATTAAAGCAGGAGGAGTTGGGTTAACTTTAACTGCTGCAAGCACTGTCATCTTTGCAGAACTGTCCTGGACTCCAGGTGACCTTATTCAGGCTGAAGATCGTGCTCATAGAATTGGCCAGGTGTCTTCTGTAAATATATACTACTTGCTGGCCAATGACACAGTTGATGACATCATATGGGATGTAGTGCAAAGCAAACTGGAAAACTTGGGACAGATGTTAGATGGGCATGAGAACACCTTAGAGGTCTCAACAAATCAACCAGAGAATAGCTCTGCAAAGCAAAAAACTCTGGACGAGTTTGTTAGAAGGTGTGATGGCAGGGATGAATTGGAAAATCAGTCCAACCCCAAACGTTCTCGGCCCTGA 2070 0.4058 MEVEDEWDLSTEELDSLERDAFQKIAQLRHSQSQSQPSPSLSSQPLSTPSPTTYPNPFPDSRPQKVEKLSQGSRALPTSSKSKGSSQDVPSKELPKLSVKFFLHSSGSVAAKFQYEQVVVAAFRKISRASWNAKERLWMFPLSSLSEAEKILGEIPGYNVQVENIDPLAHRAITAASAVPDLRDRYDKIPSYVETKLLPFQRDGVRFILQHGGRALLADEMGLGKTLQAIAVAACVQDSWPVLIIAPSSLRLQWASMIQQWLNIPSSDILVVLSQSGGSNRGGFNIVSSSGKSRIHLTGLFNIISYDLVLKLQNMLIASDFKVVIADESHFLKNAQAKRTTASLPVIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGVFQGASNHDELHNLMKATVMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFLELEMVKAKIKASKSKDEAESLKFTQKHLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTEFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSTNQPENSSAKQKTLDEFVRRCDGRDELENQSNPKRSRP* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0991 689 Pfam Helicase conserved C-terminal domain 507 606 IPR001650 -
Lan16g0991 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 420 IPR027417 -
Lan16g0991 689 SMART ultradead3 193 386 IPR014001 -
Lan16g0991 689 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 378 IPR014001 -
Lan16g0991 689 MobiDBLite consensus disorder prediction 26 49 - -
Lan16g0991 689 CDD SF2_C_SNF 493 617 - -
Lan16g0991 689 SMART helicmild6 523 606 IPR001650 -
Lan16g0991 689 MobiDBLite consensus disorder prediction 66 91 - -
Lan16g0991 689 Coils Coil 634 654 - -
Lan16g0991 689 CDD DEXHc_HARP_SMARCAL1 197 420 - -
Lan16g0991 689 Pfam SNF2-related domain 215 476 IPR000330 GO:0005524|GO:0140658
Lan16g0991 689 ProSiteProfiles HARP domain profile. 93 167 IPR010003 -
Lan16g0991 689 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 673 - -
Lan16g0991 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 651 IPR027417 -
Lan16g0991 689 Gene3D - 461 683 IPR027417 -
Lan16g0991 689 MobiDBLite consensus disorder prediction 1 91 - -
Lan16g0991 689 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 649 IPR001650 -
Lan16g0991 689 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 3 673 IPR030101 GO:0006281|GO:0031297|GO:0036310
Lan16g0991 689 Gene3D - 168 444 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0991 Lan-Chr16 17032925 17042055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0991 387 633 RAD5 or RAD16-like Gene Family AT1G61140 25.000 1.35e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan16g0991 SNF2_N 3.3e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0991 K14440 - gmx:100797654 1131.7