Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0987 ATGGAAACATTAGAACTAATTGATGCTCATCAAACTCAGTCATCATCATCTTCATCTTCTTCCATTGATAGCAGCAACCACCCTTCTTCTAAGACACCACCACCCTCTTCATCTATATTCCTCTCAGGTGCCTCCAGAAGAAGTGTCAGCACCAAAAAGAATGACCTGAGCACTGATCTCAGACTTGGTCTTAGTATCTCTCAATCTTCTCATTCTGAATTAGCATTCAATTCAACACCAAGGGACCAAACTTATGATTGGCCACCAATAAAATCCATATTGAGGAGCACCCTTGTTGAGAAACAAAACCAGCATAGACCCTCTTTGTTTGTCAAAGTCTACATGGAAGGCATTCCCATAGGTAGAAAGTTGAATCTGCTGGCACACCATAGCTATGATGGACTTGTAAAAGCTCTTGGTCATATGTTTAGGATCATTATTTTGTACCCTAATTCTCCACCAATTAGTTCTGGGAATTTTCATGTTCTTACTTATAAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTACCATGGGAGATGTTCTTGACTACTGTGAAGAGGTTGAGGATCACAAGAGCTGACAGATGCTAG 597 0.4104 METLELIDAHQTQSSSSSSSSIDSSNHPSSKTPPPSSSIFLSGASRRSVSTKKNDLSTDLRLGLSISQSSHSELAFNSTPRDQTYDWPPIKSILRSTLVEKQNQHRPSLFVKVYMEGIPIGRKLNLLAHHSYDGLVKALGHMFRIIILYPNSPPISSGNFHVLTYKDQEGDWMMVGDVPWEMFLTTVKRLRITRADRC* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0987 198 ProSiteProfiles PB1 domain profile. 108 197 IPR000270 GO:0005515
Lan16g0987 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 17 198 - -
Lan16g0987 198 MobiDBLite consensus disorder prediction 1 53 - -
Lan16g0987 198 Gene3D - 102 198 - -
Lan16g0987 198 SUPERFAMILY CAD & PB1 domains 104 193 - -
Lan16g0987 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 198 IPR003311 GO:0005634|GO:0006355
Lan16g0987 198 Pfam AUX/IAA family 18 194 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0987 Lan-Chr16 16991627 16993101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0987 100 196 B3 DNA Binding Superfamily AT2G46530 35.052 5.75e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan16g0987 AUX_IAA 7.9e-33 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0987 K14484 - gmx:100818083 265.003