Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0984 ATGGGTTCATATTCTGAAGACACAATCACTATAATCTCTGGTTTGACAATAGGTCAGGCCATATATGAAGCAGCTCTAATCATTGCACTTCTAAGATGGATCTTGTGTTTGGTTTTTAAACTAATGAGAGATAGAAACAGTGACTCTCCTCACACCACAACTGAAACAGAATCTTCATGTGTGTCTTCACATGTGATAAGAGACAACACTCTCTTATTGACAACCTTCGGTGAGATAGTGAAGAAGCTCTCAGAAGAAACACTAGACACAACATGTGCTGTTTGTTTGAACCAACTTAACATGGAAGATGAGGTTAGAGAGCTTATGAATTGTTACCATGTGTTCCACAAAGAATGCATAGATACATGGTTGGAACATGACCATGATAATCATAACCCTACTTGTCCACTTTGTAGGGCACCTTTGTTAACTCCTTGTTGTTTTTCATCATCTGAGTCTTCTACTTGTGTGCCTCCTATTCAGCCTAGTTGGGCTGTGGAGAGACTTCTATATCTCTTTGGGGATGATCTTCTCCCTTGTTAA 543 0.3941 MGSYSEDTITIISGLTIGQAIYEAALIIALLRWILCLVFKLMRDRNSDSPHTTTETESSCVSSHVIRDNTLLLTTFGEIVKKLSEETLDTTCAVCLNQLNMEDEVRELMNCYHVFHKECIDTWLEHDHDNHNPTCPLCRAPLLTPCCFSSSESSTCVPPIQPSWAVERLLYLFGDDLLPC* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0984 180 PANTHER RING ZINC FINGER PROTEIN-RELATED 13 179 - -
Lan16g0984 180 ProSiteProfiles Zinc finger RING-type profile. 92 139 IPR001841 -
Lan16g0984 180 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 179 - -
Lan16g0984 180 Pfam Ring finger domain 91 139 IPR001841 -
Lan16g0984 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 144 IPR013083 -
Lan16g0984 180 SUPERFAMILY RING/U-box 91 145 - -
Lan16g0984 180 SMART ring_2 92 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0984 Lan-Chr16 16946271 16947052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0984 1 179 C3H Transcription Factor Family AT3G43430 45.109 4.12e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0984 K16281 - gmx:111138523 236.498