Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0981 ATGGCTTCACACTCTTACACTTGTTCCAAAATGCCTCTCATCACCTTAATATTTATGCTTATGCTTTTTGTTGGATTCTTCCCCCCATTGAGTTCTAGTATTGGAACCACTCATTTATCAGGATCAGCATGTCTTAAAGTTTCATCTTCTGAATTTGTTGGGTTAGTGAGGGAAGTTATTGATATTCTGAAACAAGTTTCTTCCATTTTGTCCAAGTTTAGTAGTGGCTTAGGAGATTTTCGTCTTTCTCATGCTATTTCTGATTGCCTTGATTTGCTTGATTTGTCATCTGATGAACTCACTTGGTCTGAATCTGCTACACAAGATCCCAAAGGGAAGCATAACAGTACAGGAAACCTTAGTTCAGATTTAAGGACATGGTTAAGTGCTGTCCTTGCAAATCCAGAAACATGTTTGGAGGGATTTGAAGGAACCAACAGCATTGTAAAAGGTCTAGTATCTGCTGGTTTAGGCCAAGTAACCTCATTGGTGAAGCAGCTCCTAGCACAAGTGCATCCAACCACAGAGGATCATCACTTTAACAAGGACCAATTTCCTTCTTGGATAAAACCACGTGACAGACACCTGATCCAATCAAATGGTGTAGCTGTTGATGCTGTTGTGGCTATAGATGGAAGTGGAAATTTTACTAATGTGATGGATGCTGTGTTAGCAGCACCTGATTATAGTATGAAAAGATATGTGATATATATTAAGAAGGGTGTTTATAATGAATATGTTGAGATTAAGAAGAAGAAATGGAATATTATGATTATTGGAGATGGTACTGATGCAACTGTTATCTCTGGTAATAGGAGTTTTATTGATGGTTGGACCACTTTTAGATCAGCTACATTTGCTGTCAGTGGAAGAGGATTCATAGCACGAGACATCACTTTCCAAAACACTGCAGGACCAGAGAAGCATCAAGCAGTAGCACTAAGATCAGACTCAGACCTCTCAGTTTTCTACAAATGTGGCATTTTTGGTTACCAAGATAGCCTCTATACTCACACAATGCGCCAATTCTATAGAGAATGCAAAATAAGTGGCACTGTTGATTTCATATTTGGTGATGCAACTGCAGTGTTTCAAAACTGTCAAATCCTAGCAAAAAAAGGGTTGCCAAATCAAAAGAACACAATCACAGCACAAGGTAGAAAAGACCCTAATGAACCAACTGGTTTCTCAATCCAATTCAGCAACATAACTGCAGATTCTGACCTTGTACCATTTATTAACACTACACAAACTTATCTAGGTAGACCATGGAAGACATATTCACGTACCATTTTCATGCAATCATATTTGAGTAGTGTTATAAGACCAGAAGGGTGGTTGGAATGGAATGGTAATTTATTTTTGGACACATTGTACTATGCTGAGTACATGAATTTTGGACCAAGTGCTGGATTATTTAATAGAGTGAATTGGACAGGGTACCATATATTAAATGATTCTAGTCTAGCTAGTAACTTCACTGTGGCACAATTTATTGAAGGGAATCTATGGTTACCTTCCACAGGTGTGACCTTCACTGCTGGATTGAGTTGA 1554 0.3829 MASHSYTCSKMPLITLIFMLMLFVGFFPPLSSSIGTTHLSGSACLKVSSSEFVGLVREVIDILKQVSSILSKFSSGLGDFRLSHAISDCLDLLDLSSDELTWSESATQDPKGKHNSTGNLSSDLRTWLSAVLANPETCLEGFEGTNSIVKGLVSAGLGQVTSLVKQLLAQVHPTTEDHHFNKDQFPSWIKPRDRHLIQSNGVAVDAVVAIDGSGNFTNVMDAVLAAPDYSMKRYVIYIKKGVYNEYVEIKKKKWNIMIIGDGTDATVISGNRSFIDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYKCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATAVFQNCQILAKKGLPNQKNTITAQGRKDPNEPTGFSIQFSNITADSDLVPFINTTQTYLGRPWKTYSRTIFMQSYLSSVIRPEGWLEWNGNLFLDTLYYAEYMNFGPSAGLFNRVNWTGYHILNDSSLASNFTVAQFIEGNLWLPSTGVTFTAGLS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0981 517 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Lan16g0981 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 168 IPR035513 -
Lan16g0981 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 172 IPR035513 -
Lan16g0981 517 CDD PMEI-like_4 13 173 - -
Lan16g0981 517 Pfam Plant invertase/pectin methylesterase inhibitor 63 159 IPR006501 GO:0004857
Lan16g0981 517 Pfam Pectinesterase 205 502 IPR000070 GO:0030599|GO:0042545
Lan16g0981 517 SMART PMEI_2 35 170 IPR006501 GO:0004857
Lan16g0981 517 SUPERFAMILY Pectin lyase-like 202 515 IPR011050 -
Lan16g0981 517 ProSitePatterns Pectinesterase signature 1. 230 249 IPR018040 -
Lan16g0981 517 Gene3D - 200 516 IPR012334 -
Lan16g0981 517 PANTHER PECTINESTERASE 47 178 - -
Lan16g0981 517 PANTHER PECTINESTERASE 180 516 - -
Lan16g0981 517 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 180 516 - -
Lan16g0981 517 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 47 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0981 Lan-Chr16 16922795 16926191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0981 15 516 Carbohydrate Esterase AT3G43270 62.984 0.0 693