Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0980 ATGGCCTTTCAGGATTTTGAACTCATTACTGAAAGGCGTAAAAATGAGAAGAAACAAAAGACCAAGAAGAGAATCATCATTGGTGTTGTTTCTGCCATTCTCCTTGTTGGTCTCATAGGTTGTGCATTCTTTGTTGCTACAACAAAATATGGTTTTGGTCAGAAACAAAATGAACCTTCTCCTGAAAGCAACAACAATATTGCACATTCTGAAAGGGTTGTGAAGATGGTGTGTAGTTCAGCAGATTATAAGCAAAAATGTGAAGGGCCATTGAGTGAGGCTGTGAAGAAGGATCCTGAACTCACACACCCTAAGGATATTCTTAAACTATATGTTAAATTTGCTGATGAAGAGGTTAGTAAGGCTTTTAACAAGACCAAAACATTGAAGTTTGAGTCTAAAGAAGAGAAAGGTGCATTTGAAGATTGTAAGCAATTGTTTCAGGATGCTAAGGAAGATTTAGCAGCCTCTATATCAGAACTTGGCAGGATTGATTTCAATAAATTTTCATCAAAAACTCCTGATTTTAATAACTGGCTAAGTGCTGTTATCTCTTATCAACAAACATGTATTGATGGTTTTCCTGAGAATTCAAAGTTAAAGAAAGATCTTAATACCCTCTTCCAAGATTCTAGGGAATTCATTAGTAACTCACTTGCTATTGTGAAAAAAGTTGGATCATTACTTTCTACATTCCAATCAATTGGTGGTCGTTTGTTATCAGAGAATCATGATTCTCATGTTTTTTCTTTGGACAAAGAAGGTTACCCTGAATGGATTAAGCATGAGGATAGGAGGGTTTTGAAGGCTGCTGATGATAAACCTACACCTAATGTCACTGTTGCACAAGATGACAGTGGAGACTTCAAAACCATCTCTGAAGCTTTGGAAAAAATACCTGAAAAGTATGAAGGACGTTATGTGGTTTTTGTTAAAGAAGGAGTGTATAATGAGACTGTGATAATAACAAAGAAAATGCAAAATTTAACCCTCTATGGTGATGGATCACAAAAGAGCATCATTACTGGTAGCAAAAACTTCAGGGATGGTGTCAGGACTTTCCAAACTGCAACTTTTGTGGTACTAGGAGAGGGATTCATAGGCAAAGCAATGGGATTCAGAAACACTGCTGGACCAGAAGGGCATCAAGCAGTGGCTGCTAGAGTGCAAGCAGATCGTGCAGTATTCGCGAATTGTCGCTTCGAGGGCTACCAAGACACTCTATACACTCAAGCCCACAGACAATTCTACCGTAGTTGTGTCATTTCAGGCACCATTGATTTCATATTCGGCGACGCGGCCGTAGTGTTCCAGAATTGCATAATGAATGTTAGAAAACCACTAGACAACCAACAAAACATGGTGACAGCACAAGGAAGAATGGACAAGCAACAAACCACAGGCATTGTTCTACAAAAATGTGTGATCCAAGCGGATGAAACATTGGTTCCAGTGAAGGACCAAATAAGAAGCTACCTTGGAAGGCCTTGGAAGGAATACTCAAGGACTATAGTTATGGAATCTGAGATAGGTGATTTCATTCAACCTGAAGGGTGGACACCTTGGGCTGGTGACTTTGCACTAAAAACATTGTATTATGCTGAGTTCAATAACACTGGACCTGGTGCTAGCACAGATGCTAGGGTCAAGTGGCCTGGTTACAAGGTTATTAACAAGGATAAGGCTAAAAAGTTCACTGTAGGTGAATTCTTGAAAGGGGATTGGATTCATGGGACAGGGGTACCTTCTATTCAGGGCATGTACTTTTAG 1770 0.3949 MAFQDFELITERRKNEKKQKTKKRIIIGVVSAILLVGLIGCAFFVATTKYGFGQKQNEPSPESNNNIAHSERVVKMVCSSADYKQKCEGPLSEAVKKDPELTHPKDILKLYVKFADEEVSKAFNKTKTLKFESKEEKGAFEDCKQLFQDAKEDLAASISELGRIDFNKFSSKTPDFNNWLSAVISYQQTCIDGFPENSKLKKDLNTLFQDSREFISNSLAIVKKVGSLLSTFQSIGGRLLSENHDSHVFSLDKEGYPEWIKHEDRRVLKAADDKPTPNVTVAQDDSGDFKTISEALEKIPEKYEGRYVVFVKEGVYNETVIITKKMQNLTLYGDGSQKSIITGSKNFRDGVRTFQTATFVVLGEGFIGKAMGFRNTAGPEGHQAVAARVQADRAVFANCRFEGYQDTLYTQAHRQFYRSCVISGTIDFIFGDAAVVFQNCIMNVRKPLDNQQNMVTAQGRMDKQQTTGIVLQKCVIQADETLVPVKDQIRSYLGRPWKEYSRTIVMESEIGDFIQPEGWTPWAGDFALKTLYYAEFNNTGPGASTDARVKWPGYKVINKDKAKKFTVGEFLKGDWIHGTGVPSIQGMYF* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0980 589 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Lan16g0980 589 TIGRFAM PME_inhib: pectinesterase inhibitor domain 69 224 IPR006501 GO:0004857
Lan16g0980 589 Gene3D - 272 587 IPR012334 -
Lan16g0980 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 226 IPR035513 -
Lan16g0980 589 PANTHER PECTINESTERASE 14 587 - -
Lan16g0980 589 SMART PMEI_2 69 221 IPR006501 GO:0004857
Lan16g0980 589 SUPERFAMILY Pectin lyase-like 276 584 IPR011050 -
Lan16g0980 589 CDD PMEI-like_3 77 224 - -
Lan16g0980 589 Pfam Pectinesterase 278 574 IPR000070 GO:0030599|GO:0042545
Lan16g0980 589 Pfam Plant invertase/pectin methylesterase inhibitor 74 221 IPR006501 GO:0004857
Lan16g0980 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 225 IPR035513 -
Lan16g0980 589 PANTHER PECTINESTERASE 14 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0980 Lan-Chr16 16914970 16917311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0980 1 588 Carbohydrate Esterase AT2G26450 48.160 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0980 - - gmx:100784679 854.744