Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0965 ATGCCTTTGCATGAGTTGTACGGCATGGTTAAAGAAAAACTTGATTCTAAAGAGATGAACACAAAAACATGTGCAGTTGATCAATCTTCTCTACCTGAGAATGATTTCTCTGAGCTGGTTTGGGAAAATGGCCATATTTCAATGTTGGGTCAGTCTAATATACCTAGAAAGATCCCAACTTTTCAACTTCACAAGGGTCATCATGATAAAGATGTAGGATATGTTAATTCTAATACTAATAATAATGCTACAAACTTAAGAATGTTAAGGTTTGAAAGTGATTTAGATAATGGATTGAATGAAAATAGATTACAAGATGAAGATGTGTTACCTTGGTTGAATTATGGAATTGATGACTATAATTCTGATTTCTTACCTGAATTACCTGAATTATTGGATAAGAGAAGTAATTCTAATCAGTTATTTAGGGAATCTCATACAACCTCATCTAGAGTGTCGAATATAACCGAAAATACTACGAGTAATGTCGGAGAAACAATTCAAACACCATCTGGTTCAAGTGGTTTTTCTAGCTTAAGGATGGATAAGCAAGATCCAATTGTGTCTAGTAATAGTTGCACCATAATGAATTTCTCCCATTTTGCAAGACCTGCTGCTATAGTGAAAGCTAATCTTCGGAACATTGATATCGGAGATATGAATAAAGGTAATGTTGCAAGTAGAAGCTATCATGGTGAATCAACAAGAGTAGTGTTCAATGGTGAATGTCCAAAGGAAGCAGCTATTCATGTTATGGAACCATCCAAGGTTGATTTGAAACCGTTGCAGCCGAAATCTCTTGAGCAGAATGCTGCTGTTACTAAGCAGTGTGATCATGCTTGCAATGTAGATGTTTCAAAGATTGATCGAGCTTCGGATTTAGTTCTTGGTGAAAGTCATGGTAAAGAACAGGAAGCTGTTGAAAAAAGGATTGAGCCAGCAGTAGCCTCTTCCTCTGTCTGCTCTGGAAATGGCTCCGAGCGATTTTCGGATGATCCAAATCAAAGTTTGAAGAGAAAAAGTCGAGACACCAAAGATTCCGAGTGCCAAAGTGAAGATGCTGATGAAGAATCTGTTGGTGTTAAAAAGGCAGCTCCGGCACGAGGCGTTATCGGTTCGAAGAGAAGCCGTTCTGCTGAAGTGCATAATCTATCTGAAAGGAAGCGAAGAGACAGGATCAACGAGAAGATGCGTGCATTGCAAGAACTCATACCAAACTGCAACAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTGCAATGATGCTACCTATGGGAATGCAGCACATGCAAGCATCACACATTGCTCCATTTTCACCTATGGCTATGCAAATGGGTTATGGAATGAGAATTCATGACAATAATGGTGGATCTTCAAGATTCCCAATGGCTCATGTTCCTCAAATTCAAGGAACTAATCTCCTTTCGGCACATATGTCTGGAGCAACTGATTCACATGGGATGGCAGCAAGATCATATCCTCAAGTTTTCGGAGTTTCTAATCAGGGACTTTCCGTGCCGATGCCATGTTCTCCATTACTTCCTTTCCAAGGAGAGCCTCTTATGAACCAATCATCTCTAGGACTAATGGAAACTGTCGATTCGGTTTCGACGTCGAGCTTAAAGAATCCAATGCCAAATGTGAACTCACAAGTTATGCAAAACACTAATGCATGTAATTCAGCAATTCAAATGCCTAATCAGGTTATAATTGATGGTCCACATTGA 1797 0.3907 MPLHELYGMVKEKLDSKEMNTKTCAVDQSSLPENDFSELVWENGHISMLGQSNIPRKIPTFQLHKGHHDKDVGYVNSNTNNNATNLRMLRFESDLDNGLNENRLQDEDVLPWLNYGIDDYNSDFLPELPELLDKRSNSNQLFRESHTTSSRVSNITENTTSNVGETIQTPSGSSGFSSLRMDKQDPIVSSNSCTIMNFSHFARPAAIVKANLRNIDIGDMNKGNVASRSYHGESTRVVFNGECPKEAAIHVMEPSKVDLKPLQPKSLEQNAAVTKQCDHACNVDVSKIDRASDLVLGESHGKEQEAVEKRIEPAVASSSVCSGNGSERFSDDPNQSLKRKSRDTKDSECQSEDADEESVGVKKAAPARGVIGSKRSRSAEVHNLSERKRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPAMMLPMGMQHMQASHIAPFSPMAMQMGYGMRIHDNNGGSSRFPMAHVPQIQGTNLLSAHMSGATDSHGMAARSYPQVFGVSNQGLSVPMPCSPLLPFQGEPLMNQSSLGLMETVDSVSTSSLKNPMPNVNSQVMQNTNACNSAIQMPNQVIIDGPH* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0965 598 MobiDBLite consensus disorder prediction 299 390 - -
Lan16g0965 598 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 426 IPR011598 GO:0046983
Lan16g0965 598 MobiDBLite consensus disorder prediction 332 362 - -
Lan16g0965 598 PANTHER TRANSCRIPTION FACTOR PIF3 1 589 IPR044273 GO:0003700|GO:0006355
Lan16g0965 598 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 438 IPR036638 GO:0046983
Lan16g0965 598 MobiDBLite consensus disorder prediction 317 331 - -
Lan16g0965 598 CDD bHLH_AtPIF_like 377 439 - -
Lan16g0965 598 PANTHER TRANSCRIPTION FACTOR PIF3 1 589 - -
Lan16g0965 598 Pfam Helix-loop-helix DNA-binding domain 381 427 IPR011598 GO:0046983
Lan16g0965 598 Gene3D - 372 435 IPR036638 GO:0046983
Lan16g0965 598 SMART finulus 383 432 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0965 Lan-Chr16 16721157 16724889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0965 1 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.765 1.20e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan16g0965 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0965 K12126 - gmx:100794974 577.785