Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0955 ATGAATGAGAAAATACTTGGCTCCGATCAAATTTCCATGAATGAAAATGATTTCCTTGAGCTAGGATGTGAAAATGGTGAAATTGTTGTAAAAGGAGGTTCATCAAATATAACACAACATAACCCTTCATGCAATAATATTGGGTATTCAACAATAAACACTTCACATAAAGATGAAGCCACATACACTACAAAAAGAACAAAGTTAAACACATTATGCTCATTTTTGAATAATCATTTCCCACCTCACAATGACTTTAACCTTAGCTCTTCACATTTACACCAAACCAATGACCAAAATGATTTGAAATTCTCACAAAACAACAATAGTTTCAATAAGCTTGAAGAAGATTTTGCAACCATAAAACATGAAAAAGATTCTCCTTCATCAGAACCAAACTCAAAGAAACTCAAGTACATGGGAAATTGTGATCAAAGAAAAGTGCAGAAGGTGAACAATTTCTCCAACTTTTTAGTACCTAAAGTGTTTCTCAAATCTACTAAGCCAATAAGAAATGAAACTTCTGCAAAGTTAGAGGAGATTGAAGTAGTAAAAGGATCAAAGGGTATCAAAGGATTTCATGATCATGAAACTTCTTTAACTACTAATGATAAATCAAATGATCATGTATCCCTTGTTGTTGGAAGAAGTGATGAAAAACCACAACTTGATGATGAAAATTCTGAAGCTGTTGCTATTGTTAGAGCAAAGGGAAAAGCTAAAAGTAGCTTATGTGATGAACCCTTGTTCTCATCTTCTCCTGTATGGTCACTTGAAGCCTCAAATGACCCAAAGTTTTGTATCATGAAACATGAAGACAGTGATGAATCAACTTATTCTAGCAGAGATAATGATGAAGAGACTGAAGATGTAGTAGTAAAGGAAACACCAGCACAAGAGGGTAACAATGTCAAGAGAAAAAGGAATGGAGAGACTTATAATTTATGTGAAAAGAATCATAGAGATATAATGAACAAGAAGATGCGTATATTGAAAGAGCTTATACCATATTGCAATAAGGTGGACAAAGCTTCATTGCTAGATGATGCCATCAACTATGTAAAGAGCCTCAAGCTTCAATTACAGATTATGTCAATGAGTAATGGACTTTGCATGCCACAAATGATGTTACCTCAATTAATGGGAACTGGAATGGGTTTCACTCCAAGCACAACCATTAATCCTTGGACCCCACAACAGTTACCTATTCCATCATTGTCCAGTATCAGAGACAACAACACACTTCAGAACATGTTTGGTGCTTTCTCCAACCAAATGCTACAAATCCCACCAATTCCACACCATGTACCTAATTTCATGCCTATGATGATTGGAAACAATTCTTCTTTACAACAACTTATACCAAACACAACACCTACCAACATGCTAAAACATCTTCCTAACTCTTCACTAACAACTTTAGATGTCTCAGATCTACATGCAAAAGCTGAATTATGTGGCACAAATCAAGCACAGAATCAGACACCCTTTAACCACATTCCTAGTTATTATCCATTTTATTTTGCTACAAATAAAGAGGAAAATAAATAA 1551 0.3456 MNEKILGSDQISMNENDFLELGCENGEIVVKGGSSNITQHNPSCNNIGYSTINTSHKDEATYTTKRTKLNTLCSFLNNHFPPHNDFNLSSSHLHQTNDQNDLKFSQNNNSFNKLEEDFATIKHEKDSPSSEPNSKKLKYMGNCDQRKVQKVNNFSNFLVPKVFLKSTKPIRNETSAKLEEIEVVKGSKGIKGFHDHETSLTTNDKSNDHVSLVVGRSDEKPQLDDENSEAVAIVRAKGKAKSSLCDEPLFSSSPVWSLEASNDPKFCIMKHEDSDESTYSSRDNDEETEDVVVKETPAQEGNNVKRKRNGETYNLCEKNHRDIMNKKMRILKELIPYCNKVDKASLLDDAINYVKSLKLQLQIMSMSNGLCMPQMMLPQLMGTGMGFTPSTTINPWTPQQLPIPSLSSIRDNNTLQNMFGAFSNQMLQIPPIPHHVPNFMPMMIGNNSSLQQLIPNTTPTNMLKHLPNSSLTTLDVSDLHAKAELCGTNQAQNQTPFNHIPSYYPFYFATNKEENK* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0955 516 Pfam Helix-loop-helix DNA-binding domain 313 358 IPR011598 GO:0046983
Lan16g0955 516 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 14 487 - -
Lan16g0955 516 MobiDBLite consensus disorder prediction 273 306 - -
Lan16g0955 516 SMART finulus 314 363 IPR011598 GO:0046983
Lan16g0955 516 CDD bHLH_AtPIF_like 308 370 - -
Lan16g0955 516 Gene3D - 303 366 IPR036638 GO:0046983
Lan16g0955 516 PANTHER TRANSCRIPTION FACTOR PIF3 14 487 IPR044273 GO:0003700|GO:0006355
Lan16g0955 516 MobiDBLite consensus disorder prediction 284 306 - -
Lan16g0955 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Lan16g0955 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 381 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0955 Lan-Chr16 16622533 16626467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0955 153 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.131 1.32e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan16g0955 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0955 K12126 - gmx:100784724 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0937 4 11770898 11773778 Lan16g0955 16 16622533 16626467 LSH
Lan16g0955 16 16622533 16626467 Lan20g0569 20 4363811 4365698 PCT
Lan20g0569 20 4363811 4365698 Lan16g0955 16 16622533 16626467 PCT