Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0954 ATGGGCAAAGCCAATAGTTCTTCCTCCTCTATTAGCAGCACCAACCACCACTTTGTTATTTCAACTTCATCCTCTCTCAATGAATTCAACAATGAAGAATTTCCACCAAATCTTAACCTTGGACTAAGCATTTCCACCACTCACTATGTTTCCTCTTCTATTCCAAGGGGGCATTGGGAACCAATGAATCTACTTCTAAGCAATTCATCACAAGCTATTGAAGCTAATGATTTCAGTGATCATAGTAGCTTATATGTGAAGGTGTATATGGAAGGCATTCCAATTGGAAGAAAACTCAATATATTAGCTCATGGAGGATATTATGAGCTAGTAAAAACTCTTGAACACATGTTTGACACTACCATTCTATGGGGGAGAGAGATGGATGAAGTGCAAGTAGAGAGATGCCATGTTCTAACTTATGAAGATGAAGAAGGAGATTTGGTTATGGTTGGGGATGTCCCTTGGGAGTTGTTCTTGTCCACTGTGAAGAGATTGAAGATTACAAGGGTAGACACATTTGGGTGTTAA 531 0.3917 MGKANSSSSSISSTNHHFVISTSSSLNEFNNEEFPPNLNLGLSISTTHYVSSSIPRGHWEPMNLLLSNSSQAIEANDFSDHSSLYVKVYMEGIPIGRKLNILAHGGYYELVKTLEHMFDTTILWGREMDEVQVERCHVLTYEDEEGDLVMVGDVPWELFLSTVKRLKITRVDTFGC* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0954 176 ProSiteProfiles PB1 domain profile. 83 173 IPR000270 GO:0005515
Lan16g0954 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 175 IPR003311 GO:0005634|GO:0006355
Lan16g0954 176 Gene3D - 77 175 - -
Lan16g0954 176 PANTHER AUXIN-INDUCED PROTEIN 5 175 - -
Lan16g0954 176 SUPERFAMILY CAD & PB1 domains 78 168 - -
Lan16g0954 176 Pfam AUX/IAA family 74 170 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0954 Lan-Chr16 16606668 16608256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0954 87 168 B3 DNA Binding Superfamily AT4G23980 36.585 8.98e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan16g0954 AUX_IAA 2.9e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0954 K14484 - gmx:100818376 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0954 16 16606668 16608256 Lan8g0381 8 5969781 5971312 PCT
Lan16g0954 16 16606668 16608256 Lan20g0566 20 4331082 4332691 PCT
Lan8g0381 8 5969781 5971312 Lan16g0954 16 16606668 16608256 PCT
Lan20g0566 20 4331082 4332691 Lan16g0954 16 16606668 16608256 PCT