Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0947 ATGAAGAGCAAAATCATCGCTTCTGCGGTTTCCCTCGTTCTTGTGGTAGGTGTTGTCATTGGTGTTGTTGCTGTTGTTAGCAAGGACAACACCAATGACAATCCTCAATTGAACTCTCACAATAAGGCCGTAACGACGTTATGCAATGACGCGGACGATAAAAAACTTTGCCATGATGTCCTCAAGCCAGTTGGTAACTCTTCAAACCCAAAGGAATATGTTGAAATTGTGGTGAAAACCACCATGGAAAGTGTCATTAAGGCCTTTAACATGAGTGATAGGCTAACCATTGAGCATGGGAAGAGTAACCCTGGCATCAAAATGGCCCTTGATGATTGCAAGGACTTGTTGCAATCTGCCATCCACGAACTTGAGGCATCCGGTGTTTTTGTTCGCGACGGAAACATTCAAGATGTTCTTACACATTCCGCGGAACTCAAAAATTGGTTGGGTGCTATAATTGCCTACCAACAATCTTGCCTCGATGGCTTCAACACAGATGGAGAGAAGAATATCCAAACACAATTGAATACAGGTAGCTTGGACAATGTTGGAAAGCTTACTGGATTAGCTCTTGATATTGTATCTGGGATTTCAAAAATGCTTTCTTCATTAGACCTTGACTTGAATTTGAAACCTGCCTCAAGAAGGCTTCTTGAGGTGGATCATGAAGGGTACCCTACATGGTTATCAACTTCTGACCGTAAACTTTTGGCTACTAAATCTGAAGTTGGACTTATACCCCATGCAATTGTTTCCAAAGATGGAAGTGGGAAATATAAGACTATTTTAGATGCTATTAACTCATATCCCAAAGGACACAAAGGTAGATATGTTATCTATGTTAAGGGTGGTGTGTATAATGAGTATATTACTATTGACTACATGAAGCCCAATATTTTGTTATATGGTGATGGCCCTTCAAAAACCATAATCACTGGTCGCAAAAACTTTAATGAGGGTGTCAAGACAATGAGAACAGCCACATTTTCCACCGAAGCTGAGGATTTCATTGCAAAGGGAATTACATTCGAGAATACGGCTGGTGCCATTGGCCACCAAGCTGTTGCACTTCGTGTACAAGGCGACCGTTCAGTTTTCTTTGATTGTGCGATCCGTGGTTATCAAGACACCTTATACGTTCACGCTCATCGTCAATTCTACCGCAATTGCGAAATCTCAGGCACAATTGACTTCATCTTTGGCTACGCATCAGCCTTGATCCAAAACTCTAAGATCATAGTGAGGAAGCCTGGTCCGAACCAATCAAACATTGTTGTAGCAGATGGCACTGATCAAAAGAACATGCCTACAGGAACAGTCATTCACAATTGTGAGATCCTCCCAGAGAGTGCACTTCAAGTTGATAGGTTAAAAGTTAAGACTTATTTGGCTAGACCATGGAAAGCATACTCTAAGGCAGTGTTTATTGAGAATGTGATTGGTGACCTAATTCAACCAGAAGGGTATATTCCATGGGCTCCTGAACCCAACACTCAATTCCCTTACTTTGCTGAGTTTGGTAACACTGGACCTGGTGCAAATACTCAAGCTAGGGCTAAGTTTTCCAAAGGACAAATTAGTAAGCAAGAAGCTGAAAAGTATGTAGCTGAACGTTGGATCCAAGCTAGCACATGGTTGCCGGCAACCGGCATTCCTTTTGATGGCGGCTTCACCAAATAA 1683 0.4207 MKSKIIASAVSLVLVVGVVIGVVAVVSKDNTNDNPQLNSHNKAVTTLCNDADDKKLCHDVLKPVGNSSNPKEYVEIVVKTTMESVIKAFNMSDRLTIEHGKSNPGIKMALDDCKDLLQSAIHELEASGVFVRDGNIQDVLTHSAELKNWLGAIIAYQQSCLDGFNTDGEKNIQTQLNTGSLDNVGKLTGLALDIVSGISKMLSSLDLDLNLKPASRRLLEVDHEGYPTWLSTSDRKLLATKSEVGLIPHAIVSKDGSGKYKTILDAINSYPKGHKGRYVIYVKGGVYNEYITIDYMKPNILLYGDGPSKTIITGRKNFNEGVKTMRTATFSTEAEDFIAKGITFENTAGAIGHQAVALRVQGDRSVFFDCAIRGYQDTLYVHAHRQFYRNCEISGTIDFIFGYASALIQNSKIIVRKPGPNQSNIVVADGTDQKNMPTGTVIHNCEILPESALQVDRLKVKTYLARPWKAYSKAVFIENVIGDLIQPEGYIPWAPEPNTQFPYFAEFGNTGPGANTQARAKFSKGQISKQEAEKYVAERWIQASTWLPATGIPFDGGFTK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0947 560 PANTHER PECTINESTERASE 4 558 - -
Lan16g0947 560 SMART PMEI_2 39 194 IPR006501 GO:0004857
Lan16g0947 560 Pfam Pectinesterase 250 543 IPR000070 GO:0030599|GO:0042545
Lan16g0947 560 PANTHER PECTINESTERASE 4 558 - -
Lan16g0947 560 CDD PMEI-like_3 46 200 - -
Lan16g0947 560 Pfam Plant invertase/pectin methylesterase inhibitor 43 194 IPR006501 GO:0004857
Lan16g0947 560 SUPERFAMILY Pectin lyase-like 250 556 IPR011050 -
Lan16g0947 560 TIGRFAM PME_inhib: pectinesterase inhibitor domain 17 195 IPR006501 GO:0004857
Lan16g0947 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 199 IPR035513 -
Lan16g0947 560 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Lan16g0947 560 Gene3D - 246 558 IPR012334 -
Lan16g0947 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 198 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0947 Lan-Chr16 16548402 16551088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0947 4 558 Carbohydrate Esterase AT3G62170 38.983 5.92e-132 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0947 K01051 - gmx:100808559 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0947 16 16548402 16551088 Lan2g0243 2 1993557 1996264 LSH
Lan8g0384 8 6001557 6004883 Lan16g0947 16 16548402 16551088 PCT
Lan20g0563 20 4275137 4278421 Lan16g0947 16 16548402 16551088 PCT