Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0946 ATGAACGGGAAAATAATTGTGTCTGCTGTTTCTCTTATCCTAGTGGTAGGTGTTGCCATAGGTGTTGTTTTTGCTGTTCAGAAAAATGGTAGTGACCCTGAAGTTAAAGCTCAACAAAAATCTGTGATGATCATATGCAAAAACACTAATGACCCCAGATATTGTAGTGAAGTTCTTAGCTCTGCTCATGTTCCTAATGTTGCAGACCCTAAGTCATACCTCACTGTCCTTGTGAACTCGACCACCGAGAAAGTCATCAAGGCGTTTAACCTAACCGACAGGCTCTCATCTGAGCATGGAGGAAAAGACAATGGAGTCAAGGTAGGGCTTGATGCATGCAAACACATGTTGGAACTAGCATTGGATAGTCTTGAATTATCATCAAACTTGGTTCGTGATAACAACATCCAAACAATAAATTTCCAAATCCCTGATTTCAGTAACTGGCTAAGTTCTGTTATTTCATACAAACAAACATGTCTTGAAGCATTCGATGATGACAAAGAAGAAGAGAAAAAGATCAAGGAAAAATTAGATACAGAAAGTTTGGAAAATATTAAGAAAATCACAGCCATAGGGTTAGACATCATAGCTGATTTAACAAAGATTCTTGAAGAATTCAACGTGAAGTTGGAGCTGAAACCTGTTTCTAGACGCCTTCTTAATGTGGTAGATGTTGAGGTTGATGAAGAAAATATACCAACATGGTTTTCTCATGAAGAACGTAAGCTTTTGGGAAAAGGGTGGAGAAATAGAATTAACAAGCCAAATGTTGTTGTTGCTAAAGATGGTAGTGGTCAATTTAAGACTATTAAGGATGCTATTGATTCATACCCTAAGGGTTTCACAGGTAGATATATTATATATGTTAAGGCTGGGATATATGAAGAGTTCATCACTGTTCCAAAAACTTCTGTTAATCTTCTTATCTATGGTGATGGTCCTCAAAAAACTGTTGTTACTGGTAAGAGGAGTTTTGGTTCTGGTATAAAGACAATGCTCACTGCCACCTTCTCCAATGAGGCACGTGGATTCATTGCAAGGTCAATGAAATTTGAGAATTCTGCTGGTCCTCAAAATCACCAAGCTGTTGCATTTAGAAACACTGGAGATGGTTCAGCCGCAGTTGGTTGCCATTTTGATGGTTTCCAAGACACTTTATACGTTCACGCCAACAGGCAATTCTATCGCAACTGCGAAATCTCAGGCACAATCGACTTCATCTTCGGCACCTCTAGGACATTAATCCAAAATAGCAAAATCATCGTGAGAAAACCCGAAGTCGAAAGAGGTCAGTTTAACACGGTCACAGCGGAAGGAACTGAAATAAGCAACATGGGAACTGGAATCGTGATCCAAAATTGCCAAATAGTCCCCGATGCGGCGTTGTACCCAATAAGGTTTCAAGTCAAATCATTTTTAGGTAGACCATGGAAAAAATGTTCCACCACCGTAGTTATGGAATCGGTTATCGGCGACTTTATTCATCCAGAGGGTTGGGCTCCATGGATGGGGACAGCATTCTTAGACACTTTGTACTATGCTGAATATGCCAACACTGGGCCTGGTGCTGATGTTAAAGGAAGGATCAATTGGAAGGGTTACCATGGTATTATTAGCAAAGCTGAAGCTCAAAAATTCACTTCTCAAGTGATACTTCAAGCTGGACCTGATTCAAGTACTAGTTGGTTAAGGAAAGTTCATGTTCCTAACTACCTTGGTTTTGCAAGGCCTTGA 1737 0.399 MNGKIIVSAVSLILVVGVAIGVVFAVQKNGSDPEVKAQQKSVMIICKNTNDPRYCSEVLSSAHVPNVADPKSYLTVLVNSTTEKVIKAFNLTDRLSSEHGGKDNGVKVGLDACKHMLELALDSLELSSNLVRDNNIQTINFQIPDFSNWLSSVISYKQTCLEAFDDDKEEEKKIKEKLDTESLENIKKITAIGLDIIADLTKILEEFNVKLELKPVSRRLLNVVDVEVDEENIPTWFSHEERKLLGKGWRNRINKPNVVVAKDGSGQFKTIKDAIDSYPKGFTGRYIIYVKAGIYEEFITVPKTSVNLLIYGDGPQKTVVTGKRSFGSGIKTMLTATFSNEARGFIARSMKFENSAGPQNHQAVAFRNTGDGSAAVGCHFDGFQDTLYVHANRQFYRNCEISGTIDFIFGTSRTLIQNSKIIVRKPEVERGQFNTVTAEGTEISNMGTGIVIQNCQIVPDAALYPIRFQVKSFLGRPWKKCSTTVVMESVIGDFIHPEGWAPWMGTAFLDTLYYAEYANTGPGADVKGRINWKGYHGIISKAEAQKFTSQVILQAGPDSSTSWLRKVHVPNYLGFARP* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0946 578 Pfam Plant invertase/pectin methylesterase inhibitor 45 195 IPR006501 GO:0004857
Lan16g0946 578 SMART PMEI_2 37 196 IPR006501 GO:0004857
Lan16g0946 578 Gene3D - 252 575 IPR012334 -
Lan16g0946 578 PANTHER PECTINESTERASE 3 575 - -
Lan16g0946 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 200 IPR035513 -
Lan16g0946 578 CDD PMEI-like_3 45 202 - -
Lan16g0946 578 Pfam Pectinesterase 257 554 IPR000070 GO:0030599|GO:0042545
Lan16g0946 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Lan16g0946 578 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Lan16g0946 578 PANTHER PECTINESTERASE 3 575 - -
Lan16g0946 578 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 199 IPR006501 GO:0004857
Lan16g0946 578 Coils Coil 161 181 - -
Lan16g0946 578 SUPERFAMILY Pectin lyase-like 255 550 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0946 Lan-Chr16 16537499 16559307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0946 1 575 Carbohydrate Esterase AT2G47030 40.228 6.78e-135 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0946 K01051 - gmx:100781507 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0946 16 16537499 16559307 Lan4g1346 4 22361985 22364847 PCT