Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0944 ATGGAGAACATGGACGATTGTTGTGCCGTTTGCGCTGAACCCTTGGAATGGGTTTCGTACGGACACTGTTTGCATCGCGATGTGTGTTCCACCTGCGTCTCTCGCCTCCGTTTTATTTGCGACGATCGCCGTTGCTGCATCTGCAAAACCGAATGCGACGTCGTTTTAGTTACCAAGGCTCTAGGAGATTATACAAGGATGATAAATGACTTCTCAGCCCTGCCATCTAACGTAAGAGAGGGCAAGGTTGGATCTTACTGGTATCATGAGGATACAAATGCATATTTTGATGACATGGACCAGTACAAGATGATCAAGGCTATGTGCAGGCTGTCATGCAGTGAATGTGAAAAGATGGGGGAACAACCACATGATGCTTCAAGGCGACATGAAAGGTTTAGGAGCATAGGTCAGCTGAAAGGACATTTATTCCATCGTCATAAGTTGCACATGTGCAGTTTATGTTTGGAGGGAAGGAAGGTATTTATATGTGAGCAAAAACTATATACTAGAGCACAATTGAATCAACACATAAACACAGGTGACTCTGTGGTGGATGGCAGCGAAAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACCCCATTCTATGGGGACAATGAACTATACACACATATGTCTACTGAACATTATACATGCCATATATGCCAAAGGCAGCATCCAGGACAGTACGAATACTATAAGAATTATGATGACCTAGAGATCCATTTCCGTCAACAGCACTTCTTATGTGAAGATGAGGCTTGTCTTGCCAAGAAGTTTGTCGTCTTTCAATCTGAAGCAGAGATGAAGAGGCACAATGCTACCGAACATGGAGGACGAATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGATACCGACTAGCTTTCGATACAGACATGGTAATGAACAGAACCAACGTCGTGGAAGAGCTAGCACATTTCGTCGTGATATGTCTGAAAATCAACTTTCTATGGCCATCGAAGCCAGTTTGGAGACAGCTAATGCAGAGCAAATATTTCATGATCCATCGACATTAAGTAGTGGTCAAGTTGCTGTTGATGATGGGAATGCTGATGTTGATTCTATTGTCCAGCCATTCGAATCATTGGCTACATCAGGTTCTGAGCCATCTTCAAGATACCTCCAAGCATTGGGACACAGCTCAATAAGTGCAACTCTAGAAGATTCTTCTTTTCCTCCGCTTGCCACACCTTCCAGCACTGGCCAGCAGAATTCCAAAAATGAGTTGGAAAGTTCATCTAGTAATACTATGGCAGCACGTTTGCGCCGGCATGGCAACAGAAATGTATCTGTTATTAATTCTGGTAATGCTTGGCCTACAGCAGGTCGGGTACCGGTACAAACATCAAGTATCCCTACACAATCTAAATTGTCAACAAATGTTGCTCCTAGAGTGTCACCTAATTCTGGTCAGGGGAAGACAGTAACTAAAAGTGGGGCTTCTCCATCTACTTATGCTAATTCTATTCAGACTACCCAGAGAACTGTACATGGACAATGGTCTGCTGGTTCATTGCTGGATAAACGTGACAAAGGTAGAATTGTTCACTCTACATCTGCTCCAAATCTCACTGAGAGCAACCCTATTGAAGGTTCAATTTCCAATTTTCCTCCAATTTCTGCTGCACCAGTGAGCAAGTTACCCACAAACAGCCAATCCACATTGAATGTGGAAAATGTTCACTCTGCTAACAAGTCCTTGGTGGAAAAGATTCGCGGTGCTCTTGATTTTGATGAAGATAGATACACACTGTTTAAAGATATATCTTCTCATTTTCGCCAAAGCACAATAGATACAGATACATATCTGGATTATGTGCAGCAGTTTGGCTTATCTCATCTTGTACTCGAGATGGCAAGACTGTGCCCAGATCCTCAGAAGCAGAAGGAACTCGTTCAATCTTATAACGCTAGTATGCAAAGAAATGCTTTGCGAGAAAATAGCGGGGTTCGTGGTATCAGTAGCACCCATGGAAAAGACAGTAATAACTCCAAGAAAAGTAAAGGTAAGTCTCAAGACGTTAGAGGTAGTAACTCCACAGAGAGATTAGCAGATAGCTTTCTAAGCACTGTACATCAACTACAATCAAGTTATAAACCTTCAGAAGAGAACTTGGAGGTACTATCAAGGGGTGATTACCGAACCAACAAAGACAAGTCAAAAATCGAGCAGCAGATCAATTCAAATTCTGGTAGTCGACTTACAACGAAGCTAAATGGGCACAGTGAAACATTAACTGGCAGTTTATCTAGTCAAAATAGAGAGGGTGGTGGTGGTGGAAGCAAGCAACGCAAGAAAGCATCCAAATTCCTTAAAGTGCGCCTTGGTGATGGTTCTGTTTCAGCGCTTCTGGATCGTGGACATTTACACACCGAACCAGATCCTGGAATAACAAATGGTCTAGATAGTGACAACAATAACTTGCCTGCACGAGGTGTTTGGCGAAAAGGAGGTGCTCAGAAACTCTTTTCTTAG 2517 0.4307 MENMDDCCAVCAEPLEWVSYGHCLHRDVCSTCVSRLRFICDDRRCCICKTECDVVLVTKALGDYTRMINDFSALPSNVREGKVGSYWYHEDTNAYFDDMDQYKMIKAMCRLSCSECEKMGEQPHDASRRHERFRSIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHINTGDSVVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQQHFLCEDEACLAKKFVVFQSEAEMKRHNATEHGGRMSRSKRNAALQIPTSFRYRHGNEQNQRRGRASTFRRDMSENQLSMAIEASLETANAEQIFHDPSTLSSGQVAVDDGNADVDSIVQPFESLATSGSEPSSRYLQALGHSSISATLEDSSFPPLATPSSTGQQNSKNELESSSSNTMAARLRRHGNRNVSVINSGNAWPTAGRVPVQTSSIPTQSKLSTNVAPRVSPNSGQGKTVTKSGASPSTYANSIQTTQRTVHGQWSAGSLLDKRDKGRIVHSTSAPNLTESNPIEGSISNFPPISAAPVSKLPTNSQSTLNVENVHSANKSLVEKIRGALDFDEDRYTLFKDISSHFRQSTIDTDTYLDYVQQFGLSHLVLEMARLCPDPQKQKELVQSYNASMQRNALRENSGVRGISSTHGKDSNNSKKSKGKSQDVRGSNSTERLADSFLSTVHQLQSSYKPSEENLEVLSRGDYRTNKDKSKIEQQINSNSGSRLTTKLNGHSETLTGSLSSQNREGGGGGSKQRKKASKFLKVRLGDGSVSALLDRGHLHTEPDPGITNGLDSDNNNLPARGVWRKGGAQKLFS* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0944 838 ProSiteProfiles Zinc finger RING-type profile. 8 49 IPR001841 -
Lan16g0944 838 MobiDBLite consensus disorder prediction 660 674 - -
Lan16g0944 838 MobiDBLite consensus disorder prediction 401 431 - -
Lan16g0944 838 MobiDBLite consensus disorder prediction 719 735 - -
Lan16g0944 838 MobiDBLite consensus disorder prediction 800 838 - -
Lan16g0944 838 PANTHER ZINC FINGER PROTEIN 598 4 837 IPR044288 GO:0061630|GO:0072344
Lan16g0944 838 MobiDBLite consensus disorder prediction 660 693 - -
Lan16g0944 838 CDD RING-HC_ZNF598 8 49 IPR041888 -
Lan16g0944 838 MobiDBLite consensus disorder prediction 736 772 - -
Lan16g0944 838 PANTHER EBR1 4 837 - -
Lan16g0944 838 MobiDBLite consensus disorder prediction 447 499 - -
Lan16g0944 838 MobiDBLite consensus disorder prediction 708 780 - -
Lan16g0944 838 SMART c2h2final6 199 222 IPR013087 -
Lan16g0944 838 SMART c2h2final6 254 283 IPR013087 -
Lan16g0944 838 SMART c2h2final6 111 147 IPR013087 -
Lan16g0944 838 SMART c2h2final6 223 253 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0944 Lan-Chr16 16501910 16507530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0944 4 838 C2H2 Transcription Factor Family AT3G62240 51.740 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0944 K22381 - gmx:100780426 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0943 4 11834225 11839929 Lan16g0944 16 16501910 16507530 LSH
Lan16g0944 16 16501910 16507530 Lan2g0237 2 1939542 1945410 LSH