Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0942 ATGGCAGATATAAATGCAAGTTCAATTGGTGTTGAAAGGTTACCCGATGCAATGAATGACATGAGAATCAGGGATGACAAGGAAATGGAAGACACTGTGGTAAATGGAAATGGGACTGAAACTGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGACAACCCAAGCAGACAATAAGTTACATGGCCGAGCGTGTCGTTGGACATGGATCTTTTGGTGTAGTTTTTCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAAAAGGTACTTCAAGATAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTTCTCGACCACCCGAATGTTGTGTCATTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGATGAGCTTTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTCAATCGGGTGATCAGACACTACAATAAAATGAATCAAAGGATGCCATTGATTTATGTGAAACTTTATTCTTACCAGATATGCAGAGCACTTGCTTATCTTCACAACACTATTGGAGTATGTCACAGGGACATAAAACCGCAAAATTTACTGGTGAATCCTCACACCCACCAGCTGAAGATATGTGACTTTGGAAGTGCTAAAGTCTTGGTAAAAGGAGAACCAAACATATCTTACATATGTTCTAGGTACTATAGAGCTCCCGAGCTTATATTCGGTGCAACCGAGTACACTACGGCCGTTGACATCTGGTCAGCTGGTTGTGTACTTGGTGAATTATTGCTTGGCCAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGACCAGCTTGTGGAAATTATCAAGGTTTTAGGTACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACAGAGTTCAAATTTCCTCAAATTAAAGCTCATCCATGGCACAAGATCTTTTATAAGAGGATGCCACCCGAAGCCGTGGATCTTGTCTCAAGATTATTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTGGTTCATCCATTCTTTGACGAGCTTCGCGATCCAAATACCCGGTTGCCAAATGGGCGTTTCCTTCCTCCGCTATTTAACTTCAAAGCCAGCGAGCTTAAGGGAGTTCCGGCTGAGATGCTGGTGAAGCTGGCTCCACCTCATGCAAGAAAGCAATGTGCCTTATTTGCATCATAA 1197 0.4252 MADINASSIGVERLPDAMNDMRIRDDKEMEDTVVNGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIRHYNKMNQRMPLIYVKLYSYQICRALAYLHNTIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAVDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFYKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKASELKGVPAEMLVKLAPPHARKQCALFAS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0942 398 SUPERFAMILY Protein kinase-like (PK-like) 61 372 IPR011009 -
Lan16g0942 398 ProSiteProfiles Protein kinase domain profile. 62 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0942 398 Gene3D Transferase(Phosphotransferase) domain 1 142 389 - -
Lan16g0942 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Lan16g0942 398 CDD STKc_GSK3 57 349 IPR039192 -
Lan16g0942 398 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 2 396 - -
Lan16g0942 398 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 396 - -
Lan16g0942 398 Gene3D Phosphorylase Kinase; domain 1 46 141 - -
Lan16g0942 398 Pfam Protein kinase domain 62 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0942 398 ProSitePatterns Protein kinases ATP-binding region signature. 68 92 IPR017441 GO:0005524
Lan16g0942 398 SMART serkin_6 62 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0942 Lan-Chr16 16477942 16482247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0942 68 354 Core Cell Cycle Gene Families AT1G76540 34.915 2.71e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lan16g0942 Pkinase 3.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0942 K00924 - gmx:100788046 761.911