Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0933 ATGTCGAAGAGAAAATTCGGATTCGAAGGTTTCGGCATTAACCGTCAATCAACCTTCGATTTCGAACGATCTCAACCGCCTCAACGACTCTACGTCCCTCCCTCTTCCCGCCATGGGGCCCACGACAATTACGAAGACACCGACCTCGACAACATCGATTACGACGACAACGACGGCGGCGATGGTGGTGTTAGTGGTGGTGGTGGTGGTGGTGGTGATGGTGAAATTGATCCTTTGGATGCGTTTATGGAAGGGATTCATGAGGAGATGAAGGTGGCGCCGCGGCCGAAAGAGATAGAAAAGGTTGAAGATAGGTTTAATGATGAGGAGGATCCGATGGAGAGTTTTCTGAAGGCGAAGAAGGATTTAGGTTTGACGCTTGCATCGGATGCGTTGCATGCAGGGTATGATTCTGATGAAGAGGTTTATGCTGCTGCTAAAGCTGTTGATGCGGGTTTGGTTGAATATGATTCTGATGATAATCCTATTGTTATTGATAAGAAGAAAATTGAGCCTATACCTGCTCTTGATCATAGTTCTATTGATTATGAGCCTTTTAATAAAGATTTTTATGAGGAGTCACCTTCGATTTTAGGCATGACTGAGCAAGATGTAAATGAATACAGGAAGAGTTTGGCTATTCGTGTATCGGGTTTTGTTGTTCCTAAGCCACTAAAAACATTTGATGACTGTGGATTCTCTACACAGATTATGAGTGCTATTAGAAAGCAAGGATATGAGAAGCCCACATCTATACAGTGCCAAGCTTTACCAGTTGTGCTTTCTGGTAGAGATATTATCGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATTATGGATCAGCCTGAACTTCAGAAGGAGGAGGGTCCTATAGGAGTGATTTGTGCACCTACTAGAGAATTGGCACATCAGATATTTCTGGAGGCCAAGAAATTTGCAAAATCATACGGTATACGCGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGATCAAAGAACTCAAGGCGGGCTGTGAGATAGTTGTTGCAACCCCCGGAAGATTGATAGACATGCTAAAGTTGAAGGCATTCACAATGACAAGAGCAACTTACCTGGTGCTCGATGAGGCTGATCGGATGTTCGATCTTGGATTTGAGCCACAAATAAGGTCCATTGTTGGTCAGATTAGGCCAGATCGCCAAACTTCACTTTTTTCTGCTACAATGCCTCGCAAAGTGGAAAAGTTGGCCAGGGAAATCCTTACGGATCCTATTAGAGTAACAGTTGGGGAGGTGGGAATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCTTCCGATTCTGAAAAATTGCCATGGCTTTTGGAGAAGCTCCCTGAAATGATTGATCAAGGTGATACCTTAGTATTTGCTTCCAAGAAGGCCACTGTGGATGAAATTGAATCACAATTGGCCCTGAGAGGTTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCACATACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATCGCAAAAGATATGGACATGCATGTCCATCGCATTGGACGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCATACACACTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAATTGCTGCTGGTCAGAATGTTTCTGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAGGAAAAGGAGGAGGGAAGAAAGGCCGAGGGAGAGGTGGTGGCCGCGGTGGTGGTGGACGAGGTGTGCGTGGAGTGGATTTTGGCTTGGGTATTGGATATAATGCAGAGTCAAACAACATTCCATCATCTAACACAGTTCCAAGTCGATCTACCGCCATAAATTCTCTACGGTCAGGAGTTATGTCACAATTTAGGAGTAACTTCGTTGCTGCTTCATCAAACGCCCCAAGTCAAGGATTCACTAATAATGCAAGCATTCCTGCCAAGAGACCAGCACTTGCAGGCTTCGTATCGGGTGGATCAATCGGAGGGGATATAAATACACCACATCAGAATACTTCTTCATTCAGTCCTGCTACACCCACAGTAAATTCCACTAGTCAAAATTCTAGTCAGAAGAGCACAAACAGTTCCAAGCCTAGAGAAAGGAGAAGGCCTTCAGGTTGGGATAGATAG 2310 0.4398 MSKRKFGFEGFGINRQSTFDFERSQPPQRLYVPPSSRHGAHDNYEDTDLDNIDYDDNDGGDGGVSGGGGGGGDGEIDPLDAFMEGIHEEMKVAPRPKEIEKVEDRFNDEEDPMESFLKAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEESPSILGMTEQDVNEYRKSLAIRVSGFVVPKPLKTFDDCGFSTQIMSAIRKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIFLEAKKFAKSYGIRVSAVYGGMSKLEQIKELKAGCEIVVATPGRLIDMLKLKAFTMTRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTSLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLALRGFKVAALHGDKDQASRMDILQKFKSGTYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSVELMDLAMKDGRFRSKRDAGKGGGKKGRGRGGGRGGGGRGVRGVDFGLGIGYNAESNNIPSSNTVPSRSTAINSLRSGVMSQFRSNFVAASSNAPSQGFTNNASIPAKRPALAGFVSGGSIGGDINTPHQNTSSFSPATPTVNSTSQNSSQKSTNSSKPRERRRPSGWDR* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0933 769 CDD SF2_C_DEAD 444 576 - -
Lan16g0933 769 Pfam DEAD/DEAH box helicase 250 421 IPR011545 GO:0003676|GO:0005524
Lan16g0933 769 Pfam Helicase conserved C-terminal domain 461 566 IPR001650 -
Lan16g0933 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 457 606 IPR001650 -
Lan16g0933 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 435 IPR027417 -
Lan16g0933 769 Gene3D - 434 610 IPR027417 -
Lan16g0933 769 MobiDBLite consensus disorder prediction 722 754 - -
Lan16g0933 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 432 IPR014001 -
Lan16g0933 769 MobiDBLite consensus disorder prediction 15 75 - -
Lan16g0933 769 MobiDBLite consensus disorder prediction 613 639 - -
Lan16g0933 769 MobiDBLite consensus disorder prediction 721 769 - -
Lan16g0933 769 MobiDBLite consensus disorder prediction 755 769 - -
Lan16g0933 769 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 378 386 IPR000629 -
Lan16g0933 769 CDD DEADc_DDX42 237 433 - -
Lan16g0933 769 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 46 656 - -
Lan16g0933 769 SMART ultradead3 245 447 IPR014001 -
Lan16g0933 769 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 656 - -
Lan16g0933 769 SMART helicmild6 485 566 IPR001650 -
Lan16g0933 769 Gene3D - 190 433 IPR027417 -
Lan16g0933 769 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 226 254 IPR014014 GO:0003724
Lan16g0933 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 600 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0933 Lan-Chr16 16361635 16366365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0933 226 582 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 4.58e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0933 K12835 - gmx:100814854 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0933 16 16361635 16366365 Lan2g0227 2 1867480 1872297 LSH