Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0925 ATGGCTTTCAAGAACTTCCTCATTGCTACATTTTGTGTTTTATTTTTACTTTCCATCTTTACATCATTATCCATAGCTGATAACTATGCAAAACCCACTCCACCAGAAACTATTTGTCAATCCACAACACACCCTTCTTATTGCAAAACCATGCTTGCTAATCAAAATGGAACCATATATGACTATGGTCGCATTTCTGTTAGAAAATCATTGTCCCATTCCCTTAAGTTCTATAACTTATTGGATTCATATCTTCAAGATAAGTCATATTTGTCACAACCTACAATTAGTGTTCTTGATGATTGTAGATTCCTTGCTGAACTAAGTTATGATTACTTATCAAACACACATAACCATGTTGATAAAGCTAATGATAATAATCTTCCAAACTCTCAAACAGAAGATCTACAAACCCTTCTTAGTGCAGTTTTGACAAATCAACAAACTTGTTTAGATGGCTTAACAACCACAGATTCTGATCAGAGAGTGAAGAAACATCTTTCTTCTTCGCTTTCTGATGATACCATGCTTCATAGTGTCTCTCTTTCTTTGTTCATGAAGGGTTGGGTTCCAAATAAGAAAACACCAACAACATTGGAAAACAAAAATGGAAGACATTTGGGTTTTCAAAATGGTCGTTTACCATTGAAGATGTCAAACCGAGTACGGGAAATTTATGATAATGGTAGAGGCCATGGAAGAAAGTTACTTCAAACTGTGGATGATATTGAAAGCGTAGAGGTGAGTGACATTGTTGTTGTTAGTCAAGATGGAAGTGGAAACTTCACTACAATCAATGATGCTGTAGCAGTTGCACCAAATAACACAGATGCTGGTAATGGATACTTTGTCATTTTCATCACTGAAGGTGTATATAAAGAATACGTATCTATTGCAAAAAACAAGAAGAACTTGATGATAATTGGAGAGGGAATCAATCGTACAATTATCACAGGTGATCATAATGTCGTTGATGGTTTTACAACATTCAACTCGGCAACATTTGCTGTTGTAGCACAAGGGTTTGTTGCAGTTAACATAACATTTCGTAATACTGCTGGACCAAGCAAGCACCAAGCAGTAGCAGTAAGAAATGGAGCAGATTTATCAACCTTTTACAGTTGTAGTTTTGAAGGATATCAAGATACTTTATATACTCATTCTCTAAGACAATTCTATAGTGAATGTGATATATATGGCACAGTAGACTTCATATTTGGAAATGCTGCTGTTGTTTTTCAAAGTTGTAACTTATTTCCTCGCTTACCCATGAATGGACAATTCAATGCTATCACTGCACAAGGTCGTACAGACCCAAATCAAAACACAGGAACTTCAATACACAATGCTATTATTAAAGCTTCTAATGATTTGGCTCCAATGATTAGTAGTGTGAAAACATACCTTGGGAGGCCATGGAAGGAGTATTCAAGAACAGTTTATTTGCAATCATTTATGGATAATTTGATAGAACCTATTGGTTGGCATGAATGGAATGGAGATTTTGCATTAAGTACTTTGTTCTATGGAGAGTACAATAACACAGGACCTGGTTCTAACACTACAAATAGAGTGACTTGGCAGGGTTATCAGGTTATGAACACTAATGATGCAGCTAATTTTACTGTGTCTAGTTTTTTGGATGGAGATGTTTGGTTACCTCAAACTGGGGTACCATTCTTGAGTGAATTGATGTAG 1698 0.3569 MAFKNFLIATFCVLFLLSIFTSLSIADNYAKPTPPETICQSTTHPSYCKTMLANQNGTIYDYGRISVRKSLSHSLKFYNLLDSYLQDKSYLSQPTISVLDDCRFLAELSYDYLSNTHNHVDKANDNNLPNSQTEDLQTLLSAVLTNQQTCLDGLTTTDSDQRVKKHLSSSLSDDTMLHSVSLSLFMKGWVPNKKTPTTLENKNGRHLGFQNGRLPLKMSNRVREIYDNGRGHGRKLLQTVDDIESVEVSDIVVVSQDGSGNFTTINDAVAVAPNNTDAGNGYFVIFITEGVYKEYVSIAKNKKNLMIIGEGINRTIITGDHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYSECDIYGTVDFIFGNAAVVFQSCNLFPRLPMNGQFNAITAQGRTDPNQNTGTSIHNAIIKASNDLAPMISSVKTYLGRPWKEYSRTVYLQSFMDNLIEPIGWHEWNGDFALSTLFYGEYNNTGPGSNTTNRVTWQGYQVMNTNDAANFTVSSFLDGDVWLPQTGVPFLSELM* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0925 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 185 IPR035513 -
Lan16g0925 565 SMART PMEI_2 30 184 IPR006501 GO:0004857
Lan16g0925 565 SUPERFAMILY Pectin lyase-like 249 561 IPR011050 -
Lan16g0925 565 CDD PMEI-like_3 37 189 - -
Lan16g0925 565 Pfam Plant invertase/pectin methylesterase inhibitor 36 169 IPR006501 GO:0004857
Lan16g0925 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 187 IPR035513 -
Lan16g0925 565 PANTHER PECTINESTERASE 17 563 - -
Lan16g0925 565 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17 563 - -
Lan16g0925 565 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Lan16g0925 565 Pfam Pectinesterase 252 550 IPR000070 GO:0030599|GO:0042545
Lan16g0925 565 Gene3D - 245 564 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0925 Lan-Chr16 16234498 16236774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0925 14 565 Carbohydrate Esterase AT4G02330 57.793 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0925 K01051 - gmx:100813051 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0988 4 13672729 13674641 Lan16g0925 16 16234498 16236774 LSH
Lan16g0925 16 16234498 16236774 Lan20g0513 20 3789346 3794149 PCT
Lan16g0925 16 16234498 16236774 Lan4g1389 4 22970751 22975825 PCT