Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan16g0919 | ATGAGCAGACGTTCGAGTAGAACTATATACGTTGGGAATCTACCTGGTGATATTCGTGAGAGAGAAGTGGAAGATTTGTTTATCAAGTATGGACACATAGCTCAAATTGACCTAAAGGTTCCCCCGAGGCCACCTGGCTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGAGGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCATCGATTACGGGTGGAGATTGCACATGGTGGGCGGGGTAACACATCTTCGAGAGATCGACATAGTGGTTATAGCAATGGACGTGGTGGGGGTGGACGTGGGTTATCCAGGCGTTCTGATTATCGTGTGCAAGTCACTGGATTGCCCTCATCTGCTTCCTGGCAGGATCTTAAGGATCACATGCGGAAGGCAGGGGATGTTTGCTTTGCCCAAGTTTTTAATGATGGAGGAAGAGGTACTACTGGGATTGTAGATTATACAAACTATGATGATATGAAATATGCTATTAAGAAGCTTGATGACACTGAGTTCCGGAATGCATTTTCCAAGGCTTATGTTCGTGTTAGGGAATATGATTCAAGGCGGGACTCCTCTAGAAGTCCTAGTCGGGGCCGTTCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGTCACAGTCGAGGCCGGAGTCAAAGCAAATCTCCAAAGGGTAAATCTGCACTGCATTCACCAGCTAAATCTCCAAAGGGTAAATCATCACAACGTTCACCAGCTAAATCTCCAAAGGGTAAATCTTCACAACGTTCACCAGCTAAATCTCCACCGAGATCTGTTTCCCGTTCAAGATCGAGGTCTCTTTCGAGATCGAGGTCTCGTTCTTTATCCGGATCACGATCGAGGTCCAGATCTCCATTGCCTTTGCGTAATAAAAGCCCAAAAAGGCGCAGTGCAAGCAGGAGCCGAAGCAGGAGCAAGAGTTTATCCCGGTAA | 969 | 0.4696 | MSRRSSRTIYVGNLPGDIREREVEDLFIKYGHIAQIDLKVPPRPPGYAFVEFEDAQDAEEAIRGRDGYDFDGHRLRVEIAHGGRGNTSSRDRHSGYSNGRGGGGRGLSRRSDYRVQVTGLPSSASWQDLKDHMRKAGDVCFAQVFNDGGRGTTGIVDYTNYDDMKYAIKKLDDTEFRNAFSKAYVRVREYDSRRDSSRSPSRGRSHSRGRSYSRSRSHSRGRSQSKSPKGKSALHSPAKSPKGKSSQRSPAKSPKGKSSQRSPAKSPPRSVSRSRSRSLSRSRSRSLSGSRSRSRSPLPLRNKSPKRRSASRSRSRSKSLSR* | 323 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan16g0919 | 322 | Gene3D | - | 2 | 112 | IPR012677 | - | |
| Lan16g0919 | 322 | MobiDBLite | consensus disorder prediction | 203 | 225 | - | - | |
| Lan16g0919 | 322 | MobiDBLite | consensus disorder prediction | 300 | 322 | - | - | |
| Lan16g0919 | 322 | CDD | RRM1_SF2_plant_like | 8 | 79 | - | - | |
| Lan16g0919 | 322 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 192 | IPR000504 | GO:0003723 | |
| Lan16g0919 | 322 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 278 | - | - | |
| Lan16g0919 | 322 | CDD | RRM2_SF2_plant_like | 113 | 189 | - | - | |
| Lan16g0919 | 322 | MobiDBLite | consensus disorder prediction | 239 | 299 | - | - | |
| Lan16g0919 | 322 | MobiDBLite | consensus disorder prediction | 188 | 202 | - | - | |
| Lan16g0919 | 322 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Lan16g0919 | 322 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 117 | 178 | IPR000504 | GO:0003723 | |
| Lan16g0919 | 322 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Lan16g0919 | 322 | SMART | rrm1_1 | 114 | 186 | IPR000504 | GO:0003723 | |
| Lan16g0919 | 322 | PANTHER | OS07G0673500 PROTEIN | 2 | 278 | - | - | |
| Lan16g0919 | 322 | Gene3D | - | 113 | 191 | IPR012677 | - | |
| Lan16g0919 | 322 | MobiDBLite | consensus disorder prediction | 81 | 109 | - | - | |
| Lan16g0919 | 322 | MobiDBLite | consensus disorder prediction | 188 | 322 | - | - | |
| Lan16g0919 | 322 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Lan16g0919 | 322 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 180 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan16g0919 | Lan-Chr16 | 16160162 | 16166380 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan16g0919 | 3 | 80 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 32.099 | 1.33e-06 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan16g0919 | K12890 | - | gmx:100796900 | 370.548 |