Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0877 ATGGAACAAAACTCAGACTCTGTTGTATCAACTGAAACAAGAGAAGATTTCGGGAAGTTGCAACATGGATGCGAGCACTATAAACGAAGGTGTAAAATTCGAGCCCCTTGTTGCAATCAGATTTTTCCTTGTCGTCACTGCCACAACGAGGCTATGAGCTCACTTTCCAATCCCAATGATCGTCATGAACTTGTTAGACGCGATGTCAAGCTAGTTATATGTTCTGTCTGCGATATTGAGCAGGAGGCTGCCAAGGTGTGTTCTAATTGTGGTGTCAACATGGGAGAATATTATTGTGAGATTTGCAAATTCTATGATGATGATACAGATAAAAAACAATTTCATTGTGATCAATGTGGGATTTGCAGGGTTGGTGGTCGTCATAACTTCTTTCACTGTGAGAAATGTGGCTCTTGCTATTCAGTGGGTTTGCAAGACAATCACTTATGTGTTGAAAACTCAATGAAAAATTCCTGCCCTGTTTGCTATGAGTATCTATTTGATTCAATAAAAGGCACCACAGTTTTGAGGTGTGGACACACAATGCATGTGGAATGCTTTGAGGAAATGGCAACTCAAAATCAGTATCGTTGTCCTATATGCTCCAAGTCAATATTTGATATGTCTCAGAACTGGGGTCATTTAGATCAGGAGATTGAAACCGTTCCCATGCCAGAAGAGTATAATTTTGAGGTTTCAATTCTGTGCAATGATTGCAACACTACCAGCACAGTTTCCTTTCACATATTTGGTCATAAGTGCAGAAACTGCGGTTCGTATAACACCCGTAGGCAGTAA 798 0.4035 MEQNSDSVVSTETREDFGKLQHGCEHYKRRCKIRAPCCNQIFPCRHCHNEAMSSLSNPNDRHELVRRDVKLVICSVCDIEQEAAKVCSNCGVNMGEYYCEICKFYDDDTDKKQFHCDQCGICRVGGRHNFFHCEKCGSCYSVGLQDNHLCVENSMKNSCPVCYEYLFDSIKGTTVLRCGHTMHVECFEEMATQNQYRCPICSKSIFDMSQNWGHLDQEIETVPMPEEYNFEVSILCNDCNTTSTVSFHIFGHKCRNCGSYNTRRQ* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0877 265 Gene3D - 230 265 - -
Lan16g0877 265 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 264 - -
Lan16g0877 265 ProSiteProfiles Zinc finger CTCHY-type profile. 94 158 IPR017921 -
Lan16g0877 265 Pfam Ring finger domain 157 201 IPR001841 -
Lan16g0877 265 SUPERFAMILY RING/U-box 158 207 - -
Lan16g0877 265 Pfam Zinc-ribbon 206 263 IPR039512 -
Lan16g0877 265 ProSiteProfiles Zinc finger CHY-type profile. 17 92 IPR008913 GO:0008270
Lan16g0877 265 Pfam CHY zinc finger 24 104 IPR008913 GO:0008270
Lan16g0877 265 SUPERFAMILY Zinc hairpin stack 95 152 IPR037275 -
Lan16g0877 265 SUPERFAMILY CHY zinc finger-like 20 93 IPR037274 GO:0008270
Lan16g0877 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 229 IPR013083 -
Lan16g0877 265 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 15 264 IPR031109 GO:0008270|GO:0016567
Lan16g0877 265 SMART ring_2 159 201 IPR001841 -
Lan16g0877 265 ProSiteProfiles Zinc finger RING-type profile. 159 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0877 Lan-Chr16 15615879 15622892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0877 16 263 C2H2 Transcription Factor Family AT3G18290 42.126 2.25e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0877 K10144 - gmx:100818374 466.463