Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0876 ATGAGTGCCTCTTGTCATAGACCATGTGACTATTGTGGTCACACAATAGCACTTCTATATTGCAGAGCTGATTCTGCAAAACTATGTTTCTCTTGTGACCGTGAAGTTCATTCCACAAACCAGCTTTTCTCAAAGCACACTCGTTTTCTTCTCTGTGATATATGTGATGATTCTCCTGCTACTATATTCTGTTCAACAGAGTCCTCTGTTCTATGCCAGAACTGTGACTGGGAACAACACAACAACAACAACAACAACAACAAAAATTCTATGTCTTCTACTCATGAAAGGAGGCCTCTTGAAGGGTTTAATGGGTGCCCCTGTGTTAATGAATTGTTGGGAATTGTTGGGTTTGAAGATATTGAGAAAAAATCTTTGCTTTCTTCAGATTTGGAAAGTGGGGTTGTTGGTGGTGATGGTTATTTTGGGTATGAGGTTGAAGGGGTTTCAGATTTGTTTGTGTGGGATACTCCTTCTGTTGTTAGTCTTGATGATTTGATTTCTACTTCTGGTTCTTCTCATAATTATCAGGCTATGGAGGTTCCTCCTCTACCCAAGAATCGAAAAGCTGCTTGCGGGATGCACAAAGAAGAGGTTCTTAATCAGCTTAGCAAGCTAGCAAAGTCTGAGCCCTTGGATTTGGACACTGAACAAAATGTGCCATCAGGGAATTTATCAACTGGTTTTGAAGGTGGCTTAGAGCCTAATATCTTTCCTTCTTTTGAGTGGCATAGAGAAAGCAGTGAGCATGTAAATCAAGTAGTTCCACTTCCACCTGATATGTCATTAAGTGCTTATACTGAAGAAGTTCCGGTTAAACATTCAACTTCTGCTGTCTGGGAAACTCATACCTATGGGAACAACGAAGGGACGCCGTCACATTCTCTTACGAATGAAACCTTACCCACTACTCCTAAAGCTGTTCCATGCGAGTTAACGAGTCAAGAACGAGATTCCGCGTTACTACGTTACAAGCAGAAGAAGAAAACAAGAAGATATGAGAAGCATATAAGATATGAATCGCGAAAGGTTCGGGCAGAAAGCAGGATACGAGTTAAGGGCCGATTTGCTAAGATGAAAGACTAA 1086 0.4107 MSASCHRPCDYCGHTIALLYCRADSAKLCFSCDREVHSTNQLFSKHTRFLLCDICDDSPATIFCSTESSVLCQNCDWEQHNNNNNNNKNSMSSTHERRPLEGFNGCPCVNELLGIVGFEDIEKKSLLSSDLESGVVGGDGYFGYEVEGVSDLFVWDTPSVVSLDDLISTSGSSHNYQAMEVPPLPKNRKAACGMHKEEVLNQLSKLAKSEPLDLDTEQNVPSGNLSTGFEGGLEPNIFPSFEWHRESSEHVNQVVPLPPDMSLSAYTEEVPVKHSTSAVWETHTYGNNEGTPSHSLTNETLPTTPKAVPCELTSQERDSALLRYKQKKKTRRYEKHIRYESRKVRAESRIRVKGRFAKMKD* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0876 361 CDD Bbox1_BBX-like 8 51 - -
Lan16g0876 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 6 360 - -
Lan16g0876 361 ProSiteProfiles Zinc finger B-box type profile. 9 51 IPR000315 GO:0008270
Lan16g0876 361 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 6 360 - -
Lan16g0876 361 Pfam B-box zinc finger 51 99 IPR000315 GO:0008270
Lan16g0876 361 Pfam CCT motif 317 359 IPR010402 GO:0005515
Lan16g0876 361 CDD Bbox1_BBX-like 51 100 - -
Lan16g0876 361 ProSiteProfiles Zinc finger B-box type profile. 47 100 IPR000315 GO:0008270
Lan16g0876 361 SMART bboxneu5 4 51 IPR000315 GO:0008270
Lan16g0876 361 SMART bboxneu5 52 100 IPR000315 GO:0008270
Lan16g0876 361 MobiDBLite consensus disorder prediction 284 305 - -
Lan16g0876 361 ProSiteProfiles CCT domain profile. 317 359 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0876 Lan-Chr16 15596429 15599411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0876 7 332 C2C2-CO-like Transcription Factor Family AT2G47890 40.841 1.27e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan16g0876 zf-B_box 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0876 - - gmx:100777428 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1050 4 15247278 15251209 Lan16g0876 16 15596429 15599411 LSH