Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0869 ATGAAGAAGAAGCTCGATACCCGTTTTCCTGCTGCTCGAATAAAGAAGATAATGCAGACAGACGAGGACGTCGGAAAGATAGCCCTAGCAGTTCCTGTTTTAGTGTCTAAAGCTCTGGAGTTATTTTTGCAAGATCTTTGTGACCGAACTTATGAAATAACTCTTCAGAGAGGAGCAAAGACCATGAATGCATTGCATCTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGAGACATTGTTAGTAGGGTTCCTGACTATGGCCATGGCCATTCTGAGGCTGGTGTTGATGATCGTGCCCTTTCAAAGAGAAGGAAAGCTGCTGCGGGTGATGATTGCAATGACAGTGATGAAGAAGCTAAGAGGATTAAAATGCTTGAATTGGGCCATACAGGCAGTACCGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCATGGTCGAGGGGCTCGAACTATAGAGAGAGAGACCCATCATCAGCAGGTTGAATCTGAGCCTTTCACTTTTGTTCAACCCAATAGCAAAGATGTTCCTAATACAAGCATGGCAATAGACAATGGTCCAGAATCCAAAGAATTATCTAAGGAGAACATTCCAGTTCCTGAGGAAAATACTCAATCGCTCCATAACATTGATCTAAATGCCAACTTAAATGAAAACGAGGACAAAAATTCTTGCGCGGCAGCTCAAGCCTCATTGTCTGAACCTGCAACAGAGACTAAGCATGAAGAAATTCCAGGTTGGTCCCTTGCTGATGTGGAGATGATGGCTATTGATACTACACAGCTTGCAAACCTTGGTAGTCGACAAGAAGAGGATGAGGAAGATTATGACGAGGAAGGTTAA 855 0.4363 MKKKLDTRFPAARIKKIMQTDEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHSEAGVDDRALSKRRKAAAGDDCNDSDEEAKRIKMLELGHTGSTGRGRGRGRGRGHGRGARTIERETHHQQVESEPFTFVQPNSKDVPNTSMAIDNGPESKELSKENIPVPEENTQSLHNIDLNANLNENEDKNSCAAAQASLSEPATETKHEEIPGWSLADVEMMAIDTTQLANLGSRQEEDEEDYDEEG* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0869 284 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Lan16g0869 284 PANTHER HISTONE SUPERFAMILY PROTEIN 1 283 - -
Lan16g0869 284 MobiDBLite consensus disorder prediction 150 165 - -
Lan16g0869 284 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Lan16g0869 284 SUPERFAMILY Histone-fold 3 89 IPR009072 GO:0046982
Lan16g0869 284 MobiDBLite consensus disorder prediction 128 197 - -
Lan16g0869 284 MobiDBLite consensus disorder prediction 226 247 - -
Lan16g0869 284 MobiDBLite consensus disorder prediction 166 190 - -
Lan16g0869 284 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 283 - -
Lan16g0869 284 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0869 Lan-Chr16 15511248 15518727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0869 1 272 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.342 4.99e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lan16g0869 CBFD_NFYB_HMF 1.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0869 K21752 - gmx:100810093 410.223