Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0862 ATGGCTCCTGGAGGCAGTGCTTTCAAAGAAGTTATTGTATCTCACCTGATATCTTCAGATTATGAAACAGGCAAGGCTAAGTCTGAGGCCAAGAGTAACATTACAATGACAAAATCGGTTGTTGGGTTGAACAGAAAGAATGTAATTAGCTCAAAGAATGGTGTGCATGACTTACTTGTGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCAAATTGCAAGATTGAAGTCCATAATATTTGCCCAACTTGTCACCATGATCTTCGGAATATAAGGTGTTTGGCTTTGGAGAAAGTAGCAGAATCATTGGATCTTCCTTGCAGATATCAGACCCTAGGCTGTCACGCTATATTCCCATACTACTCAAAGCTTAAGCATGAGCAGAATTGTGGATTTCGCCCATACAATTGCCCCTATGCTGGATCCGAATGCTCTGTGTTCGGTGACATTCCAACTCTCGTATCCCATCTCAAGGACGATCACAATGTTGACATGCATGATGGATGCACCTTCAGTCATCGATATATTAAAGAAGCAAATCCGTTCGAAGTTGAAAATGCCACATGGATGCTAACTCTTTTTAATAGTTTCGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGACACAGCTCCAGTTTATATGGCCTTTTTGCGGTTTATGGGCAATGAAAGTGAAGCAAAGAAATTTGGCTACAGCTTGGAAGTTGGTGCAAATGGCCGTAAACTTACATGGCAAGGAATTCCGAGGAGCATTCGTGACCATCATAGAAAAGTTAGAGACAATCAAGATGGACTCATCATTCAGAGGAAACTTGCTCTTTATTTTTCGGGTGGGGACAGAAAAGAGTTAAAGTTGAGGATCACTGGTCGTATATGGAAAGAAGGTTGA 933 0.4191 MAPGGSAFKEVIVSHLISSDYETGKAKSEAKSNITMTKSVVGLNRKNVISSKNGVHDLLVCPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNICPTCHHDLRNIRCLALEKVAESLDLPCRYQTLGCHAIFPYYSKLKHEQNCGFRPYNCPYAGSECSVFGDIPTLVSHLKDDHNVDMHDGCTFSHRYIKEANPFEVENATWMLTLFNSFGRHFCLHFEAFQLDTAPVYMAFLRFMGNESEAKKFGYSLEVGANGRKLTWQGIPRSIRDHHRKVRDNQDGLIIQRKLALYFSGGDRKELKLRITGRIWKEG* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0862 310 SUPERFAMILY RING/U-box 53 103 - -
Lan16g0862 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 169 IPR013083 -
Lan16g0862 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 309 - -
Lan16g0862 310 SUPERFAMILY TRAF domain-like 114 307 - -
Lan16g0862 310 CDD RING-HC_SIAHs 61 96 - -
Lan16g0862 310 Pfam Seven in absentia protein family 103 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lan16g0862 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 113 IPR013083 -
Lan16g0862 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 175 303 IPR008974 GO:0005515
Lan16g0862 310 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Lan16g0862 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Lan16g0862 310 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0862 Lan-Chr16 15343184 15347970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0862 1 309 C3H Transcription Factor Family AT2G41980 74.434 1.68e-173 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0862 K04506 - gmx:100813966 571.237