Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan16g0862 | ATGGCTCCTGGAGGCAGTGCTTTCAAAGAAGTTATTGTATCTCACCTGATATCTTCAGATTATGAAACAGGCAAGGCTAAGTCTGAGGCCAAGAGTAACATTACAATGACAAAATCGGTTGTTGGGTTGAACAGAAAGAATGTAATTAGCTCAAAGAATGGTGTGCATGACTTACTTGTGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCAAATTGCAAGATTGAAGTCCATAATATTTGCCCAACTTGTCACCATGATCTTCGGAATATAAGGTGTTTGGCTTTGGAGAAAGTAGCAGAATCATTGGATCTTCCTTGCAGATATCAGACCCTAGGCTGTCACGCTATATTCCCATACTACTCAAAGCTTAAGCATGAGCAGAATTGTGGATTTCGCCCATACAATTGCCCCTATGCTGGATCCGAATGCTCTGTGTTCGGTGACATTCCAACTCTCGTATCCCATCTCAAGGACGATCACAATGTTGACATGCATGATGGATGCACCTTCAGTCATCGATATATTAAAGAAGCAAATCCGTTCGAAGTTGAAAATGCCACATGGATGCTAACTCTTTTTAATAGTTTCGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGACACAGCTCCAGTTTATATGGCCTTTTTGCGGTTTATGGGCAATGAAAGTGAAGCAAAGAAATTTGGCTACAGCTTGGAAGTTGGTGCAAATGGCCGTAAACTTACATGGCAAGGAATTCCGAGGAGCATTCGTGACCATCATAGAAAAGTTAGAGACAATCAAGATGGACTCATCATTCAGAGGAAACTTGCTCTTTATTTTTCGGGTGGGGACAGAAAAGAGTTAAAGTTGAGGATCACTGGTCGTATATGGAAAGAAGGTTGA | 933 | 0.4191 | MAPGGSAFKEVIVSHLISSDYETGKAKSEAKSNITMTKSVVGLNRKNVISSKNGVHDLLVCPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNICPTCHHDLRNIRCLALEKVAESLDLPCRYQTLGCHAIFPYYSKLKHEQNCGFRPYNCPYAGSECSVFGDIPTLVSHLKDDHNVDMHDGCTFSHRYIKEANPFEVENATWMLTLFNSFGRHFCLHFEAFQLDTAPVYMAFLRFMGNESEAKKFGYSLEVGANGRKLTWQGIPRSIRDHHRKVRDNQDGLIIQRKLALYFSGGDRKELKLRITGRIWKEG* | 311 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan16g0862 | 310 | SUPERFAMILY | RING/U-box | 53 | 103 | - | - | |
Lan16g0862 | 310 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 169 | IPR013083 | - | |
Lan16g0862 | 310 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED | 1 | 309 | - | - | |
Lan16g0862 | 310 | SUPERFAMILY | TRAF domain-like | 114 | 307 | - | - | |
Lan16g0862 | 310 | CDD | RING-HC_SIAHs | 61 | 96 | - | - | |
Lan16g0862 | 310 | Pfam | Seven in absentia protein family | 103 | 303 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Lan16g0862 | 310 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 113 | IPR013083 | - | |
Lan16g0862 | 310 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 175 | 303 | IPR008974 | GO:0005515 | |
Lan16g0862 | 310 | ProSiteProfiles | Zinc finger SIAH-type profile. | 114 | 174 | IPR013010 | GO:0008270 | |
Lan16g0862 | 310 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 309 | - | - | |
Lan16g0862 | 310 | ProSiteProfiles | Zinc finger RING-type profile. | 61 | 97 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan16g0862 | Lan-Chr16 | 15343184 | 15347970 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan16g0862 | 1 | 309 | C3H Transcription Factor Family | AT2G41980 | 74.434 | 1.68e-173 | 481 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan16g0862 | K04506 | - | gmx:100813966 | 571.237 |