Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0857 ATGGAGCTAGCTTTGAGTTTAGGTGATACACAAAAGCCTTTCTCTTTGCTTCATAATAACCCTTCTTCAACCTTACATAATAATAAAGATCCAACAAGTTTATGTATAACACTAGGAGGAGCTAGTTTCAGTGGAAAATCACAAGATAAGAGAAGGGGTTCCTCAGATCCACCACTTCAGCTTGATCTTCTTCCTTCAACACCAGTTCTTCGACCACAGCAACCTTCTTCACATCTTCAAATTCCATGGCTCACGGATGCACATGATGGAGCATTAAGCAGAAAGAGGAGAGAGGAAGATGGTGAAGAAAGAGGGAGTGATGATGATGAAAATGGCTCGACGCGCAAGAAACTCAGACTCTCCAAGGATCAATCTGCTTTTCTCGAAGAGAGTTTCAAAGAACACACCACTCTTAATCCTAAGCAGAAACTTGCTCTTGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTGAAACAAACAGAAGTGGATTGTGAATATTTAAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGGAAGTTACATAAGGAACTTCAAGAACTCAGAGCTTTGAAAACTTCACAACCATTCTACATGCAACTTCCAGCAACCACTCTCACCATGTGTCCCTCTTGTGAAAAAGTAGCCACCAACACCACCGGAGGTGCCACCACCATCCATCATATCTCCACCACTACTACCACCAACAATGATAATGGTTCTCAAGTCTATGCAGAATTGTCTCTTGGTAAGAATAATAAGATTTTGGGCTTTCCTTATAGTCAAGCCCATCAGCAAAAAGCCCATAATATGGCCTCGTGA 861 0.4111 MELALSLGDTQKPFSLLHNNPSSTLHNNKDPTSLCITLGGASFSGKSQDKRRGSSDPPLQLDLLPSTPVLRPQQPSSHLQIPWLTDAHDGALSRKRREEDGEERGSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELRALKTSQPFYMQLPATTLTMCPSCEKVATNTTGGATTIHHISTTTTTNNDNGSQVYAELSLGKNNKILGFPYSQAHQQKAHNMAS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0857 286 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Lan16g0857 286 SMART HOX_1 113 175 IPR001356 GO:0003677
Lan16g0857 286 Coils Coil 184 207 - -
Lan16g0857 286 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Lan16g0857 286 MobiDBLite consensus disorder prediction 12 48 - -
Lan16g0857 286 MobiDBLite consensus disorder prediction 1 120 - -
Lan16g0857 286 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Lan16g0857 286 SUPERFAMILY Homeodomain-like 112 180 IPR009057 -
Lan16g0857 286 MobiDBLite consensus disorder prediction 67 81 - -
Lan16g0857 286 Gene3D - 119 169 - -
Lan16g0857 286 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 93 254 - -
Lan16g0857 286 MobiDBLite consensus disorder prediction 89 120 - -
Lan16g0857 286 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Lan16g0857 286 PANTHER - 93 254 - -
Lan16g0857 286 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Lan16g0857 286 CDD homeodomain 115 172 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0857 Lan-Chr16 15270948 15274032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0857 107 238 Homeobox Transcription Factor Family AT4G37790 75.758 9.22e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan16g0857 Homeodomain 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0857 K09338 - gmx:100776113 310.842