Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0854 ATGGGGGATGAGACTTCCGACGCAATGAACCTTGATTTGAATCTGGGTCCAGGTCCGGAGCCACCAGCTGGGTCCACGATGAATGAAGCTATGAACTTGGATGATTGGATTATTGAGGAGCCTCTTCATAGATTTGGTGAAGGTTTGAGGCTTAGGGCACGACAACGGTGGAGATGGCGGCATCATCTTCCCATCCCTCCTCCTCCTGCAGTTCATGTTCATATTCCGGACGTGCCACAGCATTTGCATTTTCATATACCGCCAGAAGCTCGGAATATCTCTATGGAATTGGACCAGTTTTTGATCAATTCTAGTAATGGAAGTCCCTTACAGGCTGGTGAAGGCAGTGTGGCTGCTGAGGAGAGAATGGAGGTGCAGATGCCCAAAGCATGTGAAAACAACAATGGTATTATGGAGGATGAGACAGCAGCAAAGAAGGAAGATGTTGAAAAGGGTAGTAGCAATGATGGGGATTTTTTCGATTGTAATATATGTATGGACCTGGCCAAGGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGCCTATATCGATGGCTGCATTTACATTCTGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTTAAAAATGTTACCCCGATATATGGTCGTGGAAACAATGTTCAAGTTCCTGAGGAGGACGCCACTCTTAAAATCCCTCTCAGGCCCCATGCTAGGCGTGTTGAGAGTTTGAGACAAATCCTTCAAAGAACTGCACTCACATACCCTGTCGAAGAGATGATTCGACGTCTTGGAAGCAGAATTGATCTTACTCGGGATTTTGTTCAGGCAGGTGAAACGCTTGAGAGAACCAGTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGTATCCGGAGAGAGCAGAATGCTGGGGCACCCCCAGATGATGTGGTGGGTTTGACTCAGAATAATTCTCTTGAGGCAGGGGATAGCCGAAGGCTCCAATCCCTTTCACTTCGAAGAACACAATCAAATAGAGCAAGATTCACCTCAGCACTGAGTAGTTCTGCTGAAAGGTTAGTGGATGCATACTTCAGTAGCCAGCCATTTGTTAGAAACAATGAACAACCTCCACCAGTTGATGACAGAGATTCCTTTTCAAGTATCGGTGCTGTCATAAATTCAGAGAGTCAAGTAGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACTTCTTCCTCTAGGAGGAGAAATGATGCTTCAAGAGTTTCTGATGTTGACAGTGGAGATTCTCGTGCTCCAAGGCGTAGACGTTTGAACTGA 1308 0.4587 MGDETSDAMNLDLNLGPGPEPPAGSTMNEAMNLDDWIIEEPLHRFGEGLRLRARQRWRWRHHLPIPPPPAVHVHIPDVPQHLHFHIPPEARNISMELDQFLINSSNGSPLQAGEGSVAAEERMEVQMPKACENNNGIMEDETAAKKEDVEKGSSNDGDFFDCNICMDLAKDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKNVTPIYGRGNNVQVPEEDATLKIPLRPHARRVESLRQILQRTALTYPVEEMIRRLGSRIDLTRDFVQAGETLERTSSLLSRFLTSRGIRREQNAGAPPDDVVGLTQNNSLEAGDSRRLQSLSLRRTQSNRARFTSALSSSAERLVDAYFSSQPFVRNNEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0854 435 SUPERFAMILY RING/U-box 157 216 - -
Lan16g0854 435 CDD RING-HC_AtRMA_like 160 204 - -
Lan16g0854 435 Pfam Zinc finger, C3HC4 type (RING finger) 162 202 - -
Lan16g0854 435 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Lan16g0854 435 PANTHER OS01G0830200 PROTEIN 12 435 - -
Lan16g0854 435 MobiDBLite consensus disorder prediction 403 435 - -
Lan16g0854 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 228 IPR013083 -
Lan16g0854 435 SMART ring_2 162 202 IPR001841 -
Lan16g0854 435 MobiDBLite consensus disorder prediction 1 23 - -
Lan16g0854 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 435 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lan16g0854 435 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Lan16g0854 435 MobiDBLite consensus disorder prediction 413 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0854 Lan-Chr16 15207003 15210052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0854 1 426 C3H Transcription Factor Family AT3G58030 50.331 7.85e-129 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0854 K10666 - gmx:100811099 579.711