Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0842 ATGGATACCCGTAAGAGAGGAAGGCACGACTTCAACAACTTCAATGGCGGCTTCAAGAAAACCAAGCCAGAAACGGACTCCTTATCAACCGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGTCCATTTGGTGAGAGCTGCCACTTTCTGCACTACGTTCCTGGTGGTTATAATGCTATTGCCCATATGATGCATATAGCACCTGCTGCACCTCCGTCATCTAGAAATATCCCAGCCCCCCAACCTGTCTCTAATGGGTCCGCACAGCCTACAGTTAAAAGCCGCGTATGCAACAAGTTTAATACCGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCACGGTGAATGGGAACTTGGCAAGCCCATTGCCCCATCATTTGATGATCATCGCCCCCTGGGACCCCCTTCAGCAAGTCGTATGCCTGGTCGAATGGAGCCTCATGGTCTAGCTGCTAGCTTTGGTGCTAATGCCACTGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGCGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGAGACCATGAATCTGATCCAAATCTCAGAAACATTGAACTGGAGGGAAGTTTTGAACAAATCAACGAAGCAAGTAACATGGTTAAGGAATTACTTTTCACCTTGCAGATGTCTGCACCACCTAAACTAAAGTCCGGTGCTCCTGGCGGCCATGCCCCTCCTGGAAGCAACTTCAAGACCAAGCTGTGTGACAATTTTACAAAAGGATCTTGCACTTTTGGAGAAAGATGTCACTTTGCTCATGGAGCCGCCGACTTGCGTAAATGA 873 0.4845 MDTRKRGRHDFNNFNGGFKKTKPETDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAIAHMMHIAPAAPPSSRNIPAPQPVSNGSAQPTVKSRVCNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSFDDHRPLGPPSASRMPGRMEPHGLAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQINEASNMVKELLFTLQMSAPPKLKSGAPGGHAPPGSNFKTKLCDNFTKGSCTFGERCHFAHGAADLRK* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0842 290 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Lan16g0842 290 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 290 - -
Lan16g0842 290 MobiDBLite consensus disorder prediction 1 15 - -
Lan16g0842 290 CDD KH-I 168 231 - -
Lan16g0842 290 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Lan16g0842 290 SMART c3hfinal6 100 125 IPR000571 GO:0046872
Lan16g0842 290 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lan16g0842 290 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Lan16g0842 290 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 156 237 IPR036612 GO:0003723
Lan16g0842 290 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Lan16g0842 290 MobiDBLite consensus disorder prediction 1 31 - -
Lan16g0842 290 Gene3D - 91 130 - -
Lan16g0842 290 Gene3D - 258 290 - -
Lan16g0842 290 SMART kh_6 165 235 IPR004087 GO:0003676
Lan16g0842 290 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lan16g0842 290 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Lan16g0842 290 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Lan16g0842 290 Gene3D K Homology domain, type 1 162 257 IPR036612 GO:0003723
Lan16g0842 290 Pfam KH domain 169 232 IPR004088 GO:0003723
Lan16g0842 290 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Lan16g0842 290 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Lan16g0842 290 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Lan16g0842 290 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 290 - -
Lan16g0842 290 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0842 Lan-Chr16 14993863 14997223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0842 34 136 C3H Transcription Factor Family AT1G68200 25.243 2.95e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan16g0842 KH_1 4.2e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0842 - - gmx:100803981 485.723