Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0838 ATGAACCAGAACAAGATTGATTGCCATGAACTGATTCAACACAGTCATGGACTAAATGGGGAGTTGAATTCCGAGTTTGTCAATTATTCTTGTGAATATTTTGATATGACTCAAACTTGGAATATGAGAAGTTGCAATCAGCCACTCGAAATGGCCGGAGTTGGAGGAGGAGGAGGAGCACAGCTACCATACATAAGCACTGCTAAGTCATCTAACACAGTTATCAGCCGATTTGAGTCACCGGCTTCTGCGTTTTACGCACCCGAAAGGTGTATGGGATTCTTAGAATATGATTGCCAAGGTGGAAGTAATAATAGTCACTCTTTGAGCCCTGAAATCTCTAAGGTCAATGATTTGGAATTCCCTTTCTATCAATCTCCCAGGGAAAATATTTTCATGGATTCAGCAAACCAACCTGAACCCAACTTTGAATTGTGCAACTCCATCACTTTGCAAGGAATGGTTAATGCTCAATTGAATAGTAACAAATGTTGTACATCACCTCAAAAGTTGTTCATTGATGGTACTTCCTCACTAAACAGAAGCTCATCATTTCCTATTGAAGGAAATCAAGATCATAACACAGTAGCTTATGGTTCTTATAACTTGCCTGTTCCACAAATGAACATATCTTCTTGGAATGAGAAATCAACAACAATTTTGACAGGAAATGGGTCAACTAGTTCAGGAAATCCTGCTTCTGATGGAACAATAGTCACGAATAAAACACGAATTAGATGGACTGGAGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTCGGTGGCGCTGAGAAAGCAACTCCAAAAGCTATATTGAAGATGATGGACTCACATGGATTGACCATCTTCCATGTCAAAAGTCATTTGCAAAAGTATAGAATAGCAAGATACATGCCAGAGCCAGCTCAAGGGAAATCTGACAAAAGAATCGATATGGCGGATGTGCATCATCTTGATGTCAAAACTGGCATGCAAATTAGAGAGACACTTCAGCTGCAATTAGATGCTCAAAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAACATTACAACTTCGAATTGAGGAACAAGGGAGGCAGCTGAAAAAAATGTTTGACCAGCAGCAGAAGACAAATTATAACCACATGAATGCTACTCAGAATAGAGACAATGATGATATAGCAATTAGTCATAAAGATGTGAATGTTTCAATTTCTGAAGAGTCTTGA 1215 0.3934 MNQNKIDCHELIQHSHGLNGELNSEFVNYSCEYFDMTQTWNMRSCNQPLEMAGVGGGGGAQLPYISTAKSSNTVISRFESPASAFYAPERCMGFLEYDCQGGSNNSHSLSPEISKVNDLEFPFYQSPRENIFMDSANQPEPNFELCNSITLQGMVNAQLNSNKCCTSPQKLFIDGTSSLNRSSSFPIEGNQDHNTVAYGSYNLPVPQMNISSWNEKSTTILTGNGSTSSGNPASDGTIVTNKTRIRWTGDLHEKFVECVNRLGGAEKATPKAILKMMDSHGLTIFHVKSHLQKYRIARYMPEPAQGKSDKRIDMADVHHLDVKTGMQIRETLQLQLDAQRRLHEQLEIQRTLQLRIEEQGRQLKKMFDQQQKTNYNHMNATQNRDNDDIAISHKDVNVSISEES* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0838 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 48 403 IPR044848 GO:0003700
Lan16g0838 404 Coils Coil 329 349 - -
Lan16g0838 404 Gene3D - 241 300 - -
Lan16g0838 404 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 242 296 IPR006447 GO:0003677
Lan16g0838 404 Pfam Myb-like DNA-binding domain 246 295 IPR001005 -
Lan16g0838 404 Pfam MYB-CC type transfactor, LHEQLE motif 326 373 IPR025756 -
Lan16g0838 404 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 48 403 - -
Lan16g0838 404 SUPERFAMILY Homeodomain-like 240 296 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0838 Lan-Chr16 14909448 14912537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0838 232 381 G2-like Transcription Factor Family AT3G04450 53.247 9.74e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan16g0838 Myb_DNA-binding 6.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0838 - - gmx:100527766 462.225