Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0816 ATGGATTCTAATCCTCGTTTTCAACAACAACAACAACAACCCAATTCTGGATTACTTCGTTTTCGTTCTGCTCCAAGTTCTGTTCTTCATTCTGGTGCAGCTTCTGCTTCATATAAAGCCAACCCACCAAACGAATCATCTTCATCAATATCATCATCATCACCATTGACCCACATGAATTCTCAGCATGGATACATAACTGGGGTACCCTCTCGTTTTATGAGGCAAAACTCTATTACAAGTTCAGCTATGGATAGTTCTTATGACCTTGTTGGGTCTATGGGAATGGAACATCAACAAACCAATAATAAAAGCTTTGGTTCTGATATTTTAAGACAAAATAGCTTCCCAGTTGGAAATTTCTCCAACAATAATATCTCCTTTCAGAATGGGTATGATACTATGAAAGGTATTGGAAACTATGGTGTGATGGATGGCAGTGATAGTGAACTTAGTCTATCTATGAACAGATTGAAGAATCAAATTAGCTTCTCACCAAGAAGTCCTTCATTAGGAATGCTGTCACAGGGTTCTAAATTGGAGAATGAGGGCATCGGGGCAACTAGCTCGGATGATGGAAGAGAGGAAGGTCACAATGATGATGCACGATATTACGAACCTGGATTCCCGTATGATTCTTGGAATGGAACATCACAGCTCTCAGAAAAACTCAGTGGCTTTAAAAGAGAACGAGATAGTAATGATAAGTTATTTTTCGATGCTCAGAATGGAGAGCTTGAAAATCAAGTTCATACCCTATCACATCACTTGAGTTTGCCGAAAACATCATCGGAGATGTTTGGTATGGAGAATTTGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAAAGAGTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTGCAAGAGCTAGTTCCAAACATGGACAAGCAAACCAGCACAGCAGACATGTTGGATTTTGCTGTAGACTACATTAAAGATCTTCAGAAACAATTCAAGAGTCTGAGTGATAAAAGAGCTAAATGCAAATGTATAAGCATGCAGAAGCCAGACACAAATCAAAGCTAA 1101 0.3933 MDSNPRFQQQQQQPNSGLLRFRSAPSSVLHSGAASASYKANPPNESSSSISSSSPLTHMNSQHGYITGVPSRFMRQNSITSSAMDSSYDLVGSMGMEHQQTNNKSFGSDILRQNSFPVGNFSNNNISFQNGYDTMKGIGNYGVMDGSDSELSLSMNRLKNQISFSPRSPSLGMLSQGSKLENEGIGATSSDDGREEGHNDDARYYEPGFPYDSWNGTSQLSEKLSGFKRERDSNDKLFFDAQNGELENQVHTLSHHLSLPKTSSEMFGMENLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTSTADMLDFAVDYIKDLQKQFKSLSDKRAKCKCISMQKPDTNQS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0816 366 PANTHER TRANSCRIPTION FACTOR BHLH130 10 359 - -
Lan16g0816 366 SMART finulus 295 345 IPR011598 GO:0046983
Lan16g0816 366 MobiDBLite consensus disorder prediction 164 185 - -
Lan16g0816 366 Gene3D - 290 360 IPR036638 GO:0046983
Lan16g0816 366 MobiDBLite consensus disorder prediction 1 64 - -
Lan16g0816 366 MobiDBLite consensus disorder prediction 188 204 - -
Lan16g0816 366 Pfam Helix-loop-helix DNA-binding domain 294 340 IPR011598 GO:0046983
Lan16g0816 366 MobiDBLite consensus disorder prediction 164 204 - -
Lan16g0816 366 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 359 - -
Lan16g0816 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 355 IPR036638 GO:0046983
Lan16g0816 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 339 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0816 Lan-Chr16 14442414 14445973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0816 16 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 44.044 6.48e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan16g0816 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0816 - - gmx:100819605 436.417