Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0804 ATGGTTCGGAAGAAGAAAGACAGTGATAGCGACGAAGACGACATCTTCTACTACCGTTACTGTTCTTCATCTTCTTCAAATCAAAACCTAAACCAAAACCCTTCTCAATGTCATTCCCAATCTCAATCTCAATCTCAATCCCAAAACAACAACAACAAAGGTTCATCAGCGTTAGCTCCTTCTAAATCCACCGTATACGTTTCCAACATCGATTACTCTCTCACAAATTCCGATCTCCACACCCTCTTCTCCACCTTCGGCCGCATCGCCCGCGTCACCGTCCTCAAAGACCGCCACACTCGCCAGAGCCGCGGCGTCGCATTCATCCAGTTCGTCTCCCGCGACGACGCTTGCTCCGCCGCTTCCCAAATGCACCAGAAGATCCTCAATGGACGCACCCTCACTGCTTCTATTGCTTCCGATAATGGACGCGCGCCGGAGTTTATCAAGAAGAGGGTTTACTCTGATACCGGTCGTTGCTTTGAGTGTGGGGAGTCAGGTCATTTGTCTTATGATTGTCCGAGGAATCAGTTGGGTCCTCGGGAGCGGCCTGCGCCGAAGCGTGTGAGGCGAGGTGGAGGAAGGGGTGGTGGTAGTGGTGGGAGAGGGTTTCAGCGAAATGAGGAGGATGATGAGGAAGAAGAGGAGGAGGATGTTCGCGGTGGGGAGCGGTTTGAGGATGATAATTGGGCTTCTGTTGTGGATGATAAGGCGGATGAGAGATTGTTGGAGAGGAATGAGAAGGTTGTTGCGAAGAAGGGGAAAAAAGTTGGGTACTTTAGTGATGAGAGTGGAGATGAAGATGATGAGTGA 813 0.5068 MVRKKKDSDSDEDDIFYYRYCSSSSSNQNLNQNPSQCHSQSQSQSQSQNNNNKGSSALAPSKSTVYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRQSRGVAFIQFVSRDDACSAASQMHQKILNGRTLTASIASDNGRAPEFIKKRVYSDTGRCFECGESGHLSYDCPRNQLGPRERPAPKRVRRGGGRGGGSGGRGFQRNEEDDEEEEEEDVRGGERFEDDNWASVVDDKADERLLERNEKVVAKKGKKVGYFSDESGDEDDE* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0804 270 Gene3D - 30 223 IPR012677 -
Lan16g0804 270 SUPERFAMILY RNA-binding domain, RBD 31 145 IPR035979 GO:0003676
Lan16g0804 270 MobiDBLite consensus disorder prediction 172 242 - -
Lan16g0804 270 ProSiteProfiles Zinc finger CCHC-type profile. 159 175 IPR001878 GO:0003676|GO:0008270
Lan16g0804 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Lan16g0804 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Lan16g0804 270 Gene3D - 150 185 - -
Lan16g0804 270 MobiDBLite consensus disorder prediction 223 242 - -
Lan16g0804 270 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Lan16g0804 270 SMART rrm1_1 64 137 IPR000504 GO:0003723
Lan16g0804 270 MobiDBLite consensus disorder prediction 208 222 - -
Lan16g0804 270 SUPERFAMILY Retrovirus zinc finger-like domains 149 176 IPR036875 GO:0003676|GO:0008270
Lan16g0804 270 MobiDBLite consensus disorder prediction 25 60 - -
Lan16g0804 270 CDD RRM_ZCRB1 62 139 IPR034219 -
Lan16g0804 270 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Lan16g0804 270 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 267 - -
Lan16g0804 270 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 267 IPR044598 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0804 Lan-Chr16 14186536 14188744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0804 63 139 Eukaryotic Initiation Factors Gene Family AT4G34110 32.468 3.62e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0804 K13154 - mnt:21400072 300.441