Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0793 ATGTCAAGTGGAATAACACATTGGTGTTATACATGCAGCCAGCCAGTTGAATTTATTGAAGGGATAGATATGGTTTGTCCTTATTGTGATGGAGGCTTTTTGCAAGAACTTAGTGAGATACAAGTAATTGGAACACCAAATTATGCATTTTCATCATCACATTCACAAGACTTTGATCAAATGCCTGAATCTTTAGTGGAACAATTTGTGGAACAACTCACTTTTAATGATGATCAACCCGGGCCACCACCCGCATCGCAAGCTTCGATTAATGCGATGCCTACAATTAAGATCTCAAATGTGCATCTTCAATCCGATTCACATTGTCCAGTTTGTCAAGAAAAATTTGTTCTTGGCAACAAGGCTAAGAAGATGCCATGTAATCATTTTTACCACTCTGATTGCATTGTTCCTTGGTTGGTTCAACATAATACATGCCCTGTTTGTCGCATTCCGATGCCATCACAAGAACGTTCTCGTTCTCATAGTAGTCGAAATAGGGGAGAGAGAAGTGGTAGAGAGAATAGACGACGTAATCATGGTCGAAGGAATCCATTATCATTTTTATGGCCATTCAGTTCTTCTGGTTAA 591 0.3926 MSSGITHWCYTCSQPVEFIEGIDMVCPYCDGGFLQELSEIQVIGTPNYAFSSSHSQDFDQMPESLVEQFVEQLTFNDDQPGPPPASQASINAMPTIKISNVHLQSDSHCPVCQEKFVLGNKAKKMPCNHFYHSDCIVPWLVQHNTCPVCRIPMPSQERSRSHSSRNRGERSGRENRRRNHGRRNPLSFLWPFSSSG* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0793 196 SMART ring_2 109 149 IPR001841 -
Lan16g0793 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 156 IPR013083 -
Lan16g0793 196 MobiDBLite consensus disorder prediction 151 196 - -
Lan16g0793 196 MobiDBLite consensus disorder prediction 160 175 - -
Lan16g0793 196 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Lan16g0793 196 PANTHER OS03G0351800 PROTEIN 1 63 - -
Lan16g0793 196 PANTHER OS03G0351800 PROTEIN 66 195 - -
Lan16g0793 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 63 - -
Lan16g0793 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 195 - -
Lan16g0793 196 Pfam Ring finger domain 108 150 IPR001841 -
Lan16g0793 196 SUPERFAMILY RING/U-box 89 156 - -
Lan16g0793 196 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Lan16g0793 196 CDD RING-H2_RNF126_like 109 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0793 Lan-Chr16 13964867 13965563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0793 9 192 C3H Transcription Factor Family AT1G68180 32.086 1.22e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0793 K11982 - lang:109329340 378.252