Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0780 ATGGCTTCCTCATCCAGCAGCGGTTTAACTTTCAAGCTTCACCCTTTGGTCATCGTTAACATCTCAGACCATTACACAAGGGTTAAGTCTCAGCTGAACCCACCAATCGCACCTCACAATACCACCACCACCACCACCGCCAATGGCGGCGACGCTGTCGCTTCTTCCGTTCCACCGCGGGTCTATGGCTGCGTCATAGGGGTGCAGAAGGGTCGCACCGTTGAAATCTTCAATAGCTTTGAGCTTCTCTATGATTCTTCCACTAATTCGCTTGATCGTCCGTTTCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTTTTCCCAAACTTCTACATACTGGGATGGTATTCAACTGGGAGTGACGCAGAAGAATCAGATATGCTTATTCACAAAGCTTTGATGGATATCAATGAAAGTCCGGTTTATCTTCTTCTCAATCCTTCAATCAATCATTCTCAGAAGGATCTCCCAGTCAGTATTTTCGAAAGTGAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCGCTCAAGTTATACTATTGAGACTGTTGAAGCAGAACGGATCTCTGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCTGCTACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCTATCAAAATGCTTCATAGTAGAATTAAGGTGTTACATCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTGTTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGAAAATTTCAAGATGATTTCTTGATGGAATACAATGACACCTTATTGATTAGTTACCTTGCCATGCTGACCAACTGCTCAAGTGCTACAAATGATCTGGTGGACAAATTCAATACTGCATATGACAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGTGA 963 0.432 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQLNPPIAPHNTTTTTTANGGDAVASSVPPRVYGCVIGVQKGRTVEIFNSFELLYDSSTNSLDRPFLEKKQELYKKVFPNFYILGWYSTGSDAEESDMLIHKALMDINESPVYLLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSATNDLVDKFNTAYDRHSRRGGRTAFM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0780 320 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 139 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lan16g0780 320 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 320 - -
Lan16g0780 320 Gene3D Cytidine Deaminase, domain 2 1 201 - -
Lan16g0780 320 SMART pad1_6 10 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lan16g0780 320 CDD MPN_CSN6 9 316 IPR033859 GO:0000338|GO:0008180
Lan16g0780 320 Pfam Maintenance of mitochondrial structure and function 187 301 IPR024969 -
Lan16g0780 320 MobiDBLite consensus disorder prediction 32 52 - -
Lan16g0780 320 ProSiteProfiles MPN domain profile. 11 167 IPR037518 -
Lan16g0780 320 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0780 Lan-Chr16 13707107 13715972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0780 2 271 Eukaryotic Initiation Factors Gene Family AT2G39990 22.909 2.25e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0780 K12179 - gmx:100797079 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1094 4 16408439 16415309 Lan16g0780 16 13707107 13715972 LSH
Lan2g0176 2 1478069 1486393 Lan16g0780 16 13707107 13715972 LSH