Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0773 ATGAACTCACTTAGTCAAATGTTTAGAAACATATTTTCAGACAACAGCAACATCATGCTTGCAGCTATCATTTCCTTGCTCCTAGTCATACTCTTTGTGCTTCTCCTCCATCTCTATGCCAAGTGGTTCATATTTCAGGCTCAAGCACGTGCCCAGCGCCGCCGTCGTCCCACGATAACCACCGTGACTGTCTCCGATGTCCTAGGCCCTGCAAGGTTCCACCACTTCCACAGCTTCAACATAGAAGACTCGCCCCTCTCGAGTTCTAACACTAAAGGCCTTGATTCTTCTATCGTTGCTGCAATTCCAAAGTTTATGTATAAAGCTGCTGCAGAAGCAGAAGAGCAAGATGATGATGATGGTGATAAGGTTAAACAAGAATTGGAATGTGTGATTTGTTTGAGTACTTTTGAAGATAGTGAAATGGGAAGGTGTTTGCCAAAATGTGGACATGGTTTTCATATGGAGTGCATTGATATGTGGTTGAATTCACATTCCAATTGTCCAATTTGCAGAGCTCCTGTTGTGGCTGGTTCTCAAGTACATTCAGTAGGTAATGTTGGGGAAGGTGATGATTCTGCATTTGTTGAGATTGGGGTTGATGATTCTATTGTTAATCCAAACTCTGAGATTAGAGAGAGTGAGAATGGGAATGAGAATGGAAATGATAACGCAGGAGTGAGTGGTTCTGTGTCAGAAGCTTCATTTTTGTTGTTTGGGTGCTCTTTAAAGGGAATCCTGAATAAAGTTTTCTCATCTTCCAATGTAAATGAATTGCATGCTTCAGAGCCATGA 795 0.4201 MNSLSQMFRNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFIFQAQARAQRRRRPTITTVTVSDVLGPARFHHFHSFNIEDSPLSSSNTKGLDSSIVAAIPKFMYKAAAEAEEQDDDDGDKVKQELECVICLSTFEDSEMGRCLPKCGHGFHMECIDMWLNSHSNCPICRAPVVAGSQVHSVGNVGEGDDSAFVEIGVDDSIVNPNSEIRESENGNENGNDNAGVSGSVSEASFLLFGCSLKGILNKVFSSSNVNELHASEP* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0773 264 SUPERFAMILY RING/U-box 129 178 - -
Lan16g0773 264 CDD RING-H2_EL5_like 129 172 - -
Lan16g0773 264 Pfam Ring finger domain 129 172 IPR001841 -
Lan16g0773 264 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 256 IPR044675 -
Lan16g0773 264 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Lan16g0773 264 SMART ring_2 130 171 IPR001841 -
Lan16g0773 264 PANTHER - 2 256 - -
Lan16g0773 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0773 Lan-Chr16 13452068 13453243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0773 10 209 Rapid Response to Elicitors AT3G16720 32.020 2.77e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0773 - - lang:109329145 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1012 2 21182459 21183440 Lan16g0773 16 13452068 13453243 LSH
Lan16g0773 16 13452068 13453243 Lan2g1012 2 21182459 21183440 PCT
Lan16g0773 16 13452068 13453243 Lan9g1207 9 19400842 19401981 PCT
Lan2g1012 2 21182459 21183440 Lan16g0773 16 13452068 13453243 PCT
Lan9g1207 9 19400842 19401981 Lan16g0773 16 13452068 13453243 PCT