Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0759 ATGTTCACCGCTTCCAATGGTTTGCATTACAGAATTTCTGCTTTGCTTGAGTTCTCAGCCGCAAATGATGTGAAGGGTTTAAAAAATGCAATTGAAGAAGAGGGTCATGATGTTGCTGAGGTGGGATTGTGGTATGGAAGAAGGGTTGGTTCAAAGGACTTTGGTTATGAAGAGAGGACCTCTCTTATGGTTGCTGCTATGTTTGGAAGCAAAGATGTGTTATCTTATATTCTTGGAACCGGTGGTGTTGATGTTAACCGGACTTGTGGGTCAGATGGGGCCACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTGCCAATTCGCCGGAAATCATCAAATTTTTGCTTGATGCATCGGCTGATGTTAATGCTGTTGATGCCAACGGGAACCGGCCCTCTGACTTGATTGGCTTTGTGTTCAATAGTATATTCAATCCTAGGAGGAGGATACTGGAAGCCATACTAGAAGGTAAAGATGGTGGTTTTGATGAGGCTTGCCTTACATTTGATAAAGCAGATGGCGAAATGGTGAGACTGAAACAGCATTATATCGATGTGCATCGTGTTCCAAGGGAAGGGACTGAGAAGAAAGTTTATTCTGTTGATGTCTCTCTTCCAGACATAAAGGATGGGATATATAGTACAGATGAGTTTCGGATGTATACATTCAAAGTTAAGCCATGTTCAAGGGCTTATTCTCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGTGAAAATGCAAGGCGACGAGATCCATTGAAATATCATTATAGCTGTGTTCCTTGCCCTGAGTTCAAGAAGGGATTGTGCAGCAAAGGAGATGCTTGTGAGTATGCACATGGTATCTTTGAGTGCTGGCTTCACCCTGCGCAGTATCGAACTCGGCTTTGCAAAGATGAGGGTGGATGCACCAGAAGAGTTTGCTTCTTTGCTCACAAGTTGGAGGAGCTTCGTCCGTTGTATGCTTCTACTGGTTCTGCAATGCCTTCTCCCAAAACATATTCGGCTGCTGCTTCTTCATTAGAGATTGGTTCATTAAGCCCTTTCATACCAAGCTCTCCACCTGCCTCAGTAACACCTTTGTCTCCATCTGGAGCAGCTTCTCCTCTGGGCAGAACAGCCATGTGGCAGACCACTCAGTTTCATGTAGCAGTCCCTACGCTTCAGCTGGCCGGAAGCAGATTAAAAACAGCATCAAATGCTAGAGATGTTGGTTTAGGCATTGAAGTGCCTGGACTAGAAAATCGTCGACTTATGCAGAATATGCTTTTTTCGGATGAGATGGCTGAGCTTTCATCCCCTTCCAAATGGAAAAATACCAAGCGAAATAGTCCATCTTTTCCTGACTCATTTGATGCTGATGCTGGGGAGTTAAATAGGAATCAGCAACTAAGAGGCTATTCTTCAAATGTGATTGGATCACCATTGGCTTTGACTTCAAGAAATGCTGCATTTTCAAAGCGGAGTCAGAGCTTTATTGAGCGAAGTGTGGTGAGCCATAATTCTGAGCCTTCCATCTTCTCTGGATGGGGCTCCCCTGATGGCAAATTAGACTGGGGCATCCGCGGAGAAGAGCTGAATAAACTGCGAAAATCTGCTTCTTTTGGATTTCGAGGGAACAGTAGTCCTTTAATAATGGCTGCAACCACTTCGCCACCGAATGTTGATGAACCAGATGTATCTTGGGTTCATTCACTTGTGAAGGATGCTCCACCAATGGAAACTGGCCAGTATGGCATTGAAGAGGAGCTACATTCGCCGCAACGCTATCTTAACAATGGAACAGATGTGGTTCCAGCTTGGCTGGAGCAATTGTACATGGAGCAGGAACAGATGGTGGCTTGA 1848 0.4502 MFTASNGLHYRISALLEFSAANDVKGLKNAIEEEGHDVAEVGLWYGRRVGSKDFGYEERTSLMVAAMFGSKDVLSYILGTGGVDVNRTCGSDGATALHCAVAGGSANSPEIIKFLLDASADVNAVDANGNRPSDLIGFVFNSIFNPRRRILEAILEGKDGGFDEACLTFDKADGEMVRLKQHYIDVHRVPREGTEKKVYSVDVSLPDIKDGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPLKYHYSCVPCPEFKKGLCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGGCTRRVCFFAHKLEELRPLYASTGSAMPSPKTYSAAASSLEIGSLSPFIPSSPPASVTPLSPSGAASPLGRTAMWQTTQFHVAVPTLQLAGSRLKTASNARDVGLGIEVPGLENRRLMQNMLFSDEMAELSSPSKWKNTKRNSPSFPDSFDADAGELNRNQQLRGYSSNVIGSPLALTSRNAAFSKRSQSFIERSVVSHNSEPSIFSGWGSPDGKLDWGIRGEELNKLRKSASFGFRGNSSPLIMAATTSPPNVDEPDVSWVHSLVKDAPPMETGQYGIEEELHSPQRYLNNGTDVVPAWLEQLYMEQEQMVA* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0759 615 MobiDBLite consensus disorder prediction 434 455 - -
Lan16g0759 615 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lan16g0759 615 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 478 614 - -
Lan16g0759 615 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 6 463 - -
Lan16g0759 615 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Lan16g0759 615 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Lan16g0759 615 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lan16g0759 615 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lan16g0759 615 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Lan16g0759 615 Gene3D - 257 320 - -
Lan16g0759 615 ProSiteProfiles Zinc finger C3H1-type profile. 262 284 IPR000571 GO:0046872
Lan16g0759 615 MobiDBLite consensus disorder prediction 434 448 - -
Lan16g0759 615 Gene3D - 11 139 IPR036770 -
Lan16g0759 615 PANTHER UNKEMPT FAMILY MEMBER 478 614 IPR045234 -
Lan16g0759 615 PANTHER UNKEMPT FAMILY MEMBER 6 463 IPR045234 -
Lan16g0759 615 SUPERFAMILY Ankyrin repeat 13 135 IPR036770 -
Lan16g0759 615 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lan16g0759 615 Pfam Ankyrin repeats (many copies) 58 116 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0759 Lan-Chr16 12898929 12901908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0759 10 610 C2H2 Transcription Factor Family AT5G12850 38.364 3.53e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan16g0759 Ank_4 1.8e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0759 - - aprc:113846970 786.563