Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0748 ATGGCTTTGAGGTTTATAACGATTTCGGCAATTTCAACATTGCTAAGTTTTGTGGGTCTGCAGTTTTGCGCAGACTTCTCTTTAGATACACTTAAATCAGATGGTCTAGTTGGCTGGGATGTAATGCAATTGGACAATGGCAACCATGACACAAAGTTACCTTTGGGTTTGTTCACTACTGTAGGGCTACTTGCGAATTGCATGATCAATGTATTTATCCTTCTTAATCTTTGTCTGAAGGCTATGTTCTTCACAGAGTTGTATTCTTCTGAAACTCGTAAACTGATTGAGCGTCTCATTAATTATGTTGTTTACAAGGGGACATTCCTACCACTTATTGTGCCACCAACTATATATCAGGCTGGTCTTTGGTCAATTTGGTTGGCTGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTAGCCAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGCTACACCCTGGACATATCTCCGTGTATATTCAGCATTGTTATTTGTTTTCTTGGTTGATGTTCTCTGGATAAGGCTATGTCTGGGGATATATAGAACGCATGAGTCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTAAGTATTGCTTTTGAGACCTTACAGGCCATTTTGGTACATGGATTTCAGTTAGTTGATATATGGTGCAACAACAGTGATTGCCGAAGGCCTAAACTGTTCGACTCAATAACAGCAGGTTCACTATTGGAATGTAAGGGAATTCTTGTTCGGAACTTGGGATTTTTCCTAGACATGGCAACATTTTTTATGGCGCTAGGCCATTACATGTATATATGGCGGCTTCATGGCGTGGCATTCCATCTTGTAGATGCAGTGCTATTTCTAAATACACGTGCGTTACTTAGTGCAATTGTAAATCGCATAAAAGGCTTTATTAGGCTAAGGATAGCTCTAGGAGCTCTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGATATGTATACTTGTCCTACATGTCGAAAGCCTCTTTTTGCAGGCCGACCTGAAAGTGACACAAACTCCACTACCGAGATATCAAGCGATGAGCAACTTGCACGCCAAATGAGTACAGGACTTGGTCAGGCAAACTCTACTAATACCATCCCTGCAGGATTATATCACAATCAAACACCAAATTCTGTGGAAGGTGTTCCTTGGAGGGGTGCAGGACTGGATGCAGGTTGGTTGCACTCATGGCCAAATCAAGGTGTCGATGGAGCTGGTCCATCCACTGCAATCAGAACAGTTGGACTTGGAGGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACCGCCTTTGAAGAACCTGCTTGGAGCCTTTGGCCTATTAATCCCTCTCAGGCTTCTACAAGTGATTCAACCATTCCTTCCCCTCGGGGAAGATTGCCAGGACGAAGTGGCAGTTTACATATAAGGACTGCTTCACAATCTGCAAATGATGATGTGACAAATATGCTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGAGTTAATATTCCAGGACTTGCAGCGGACAAATTCTGTCTCAGTCACTGTGAATAATTTTCTCCAAATGTGA 1740 0.4264 MALRFITISAISTLLSFVGLQFCADFSLDTLKSDGLVGWDVMQLDNGNHDTKLPLGLFTTVGLLANCMINVFILLNLCLKAMFFTELYSSETRKLIERLINYVVYKGTFLPLIVPPTIYQAGLWSIWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFLVDVLWIRLCLGIYRTHESSLFLLLFFEPLSIAFETLQAILVHGFQLVDIWCNNSDCRRPKLFDSITAGSLLECKGILVRNLGFFLDMATFFMALGHYMYIWRLHGVAFHLVDAVLFLNTRALLSAIVNRIKGFIRLRIALGALHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTDMYTCPTCRKPLFAGRPESDTNSTTEISSDEQLARQMSTGLGQANSTNTIPAGLYHNQTPNSVEGVPWRGAGLDAGWLHSWPNQGVDGAGPSTAIRTVGLGGVQMMMRHLASVGETYAQTAFEEPAWSLWPINPSQASTSDSTIPSPRGRLPGRSGSLHIRTASQSANDDVTNMLAMAETVREVLPHIPDELIFQDLQRTNSVSVTVNNFLQM* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0748 579 ProSiteProfiles CUE domain profile. 539 579 IPR003892 GO:0043130
Lan16g0748 579 Pfam CUE domain 542 579 IPR003892 GO:0043130
Lan16g0748 579 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 579 - -
Lan16g0748 579 SUPERFAMILY RING/U-box 320 382 - -
Lan16g0748 579 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Lan16g0748 579 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 579 - -
Lan16g0748 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 382 IPR013083 -
Lan16g0748 579 SMART ring_2 333 374 IPR001841 -
Lan16g0748 579 CDD CUE_RIN3_plant 540 577 IPR035667 -
Lan16g0748 579 Pfam Ring finger domain 331 375 IPR001841 -
Lan16g0748 579 Gene3D - 538 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0748 Lan-Chr16 11967045 11980944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0748 64 423 C3H Transcription Factor Family AT3G16090 26.790 2.97e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0748 K10636 - gmx:100819656 978.778