Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0718 ATGGCAACCATTGCTACCTTCTTCAACAAGTTCCTCTCTCTTCTCCTTATCCTCTTTGTTCACCTTGGTTGCTTCATCTTCACGAAACAAGAAAATCCACCATCAAAGAAACGCAAAAGCTCATCTTTATCTCTTTCCCACACCAAATTTAAGACCCAGAAAGCCATTTCTTCTTCTTGGCATTTCATCAAACACCTCTTCTCCTCAAAATCAAGCAAGACCAAAAACACCACGCTTTCATCACCGCAATCCACAACCACCGCAATACAGTCTTTAATCTCCGGCGGGTCCTCCCAGGCACATCAAGAATTTGATTTCCCAGATCCTCCTCGCAGAAAAAGAACCGGGTCTGGGTCATGCTCCGAATCCGACATTTCCGCCGACAACAACCATTTCCTCCGCAATGACATCTTCCCATGCACCGTTTGCGGCGAGGTTTTCCATAAACTCAACCTTCTCGATCAGCACCAAACCACCAAGCACGCTGTGTCAGATCTTGCAGGATCCGACCCGGGTCACAACATCGTTCAGATCATATTCAAGTCGGGTTGGCCAGAGACCCGGATTCTCCCTGTCATAACCCGGATCCTGAAGATCCATAACAGCCGTAAAATCCTCTCAAAATTCGAGGACTACCGTGAGAGGGTGAAGGCCAAGGCTGCGCGTAATATGACGCGCTTCCGTGATGAGCGGTGCGTCGCTGACGGAAACGAGCTCATGCGGTTCCACTGCTCCACTTTTCTTTGCGACTTGGGACTTAACGGGAATTCTAAAATTTGTTCGCAGCAGTTTTGTAATATTTGTGGTATCATTAAATCGGGTTTCTCGCCCAAGCTAGATGGCATCTCCACGATGTCATCTAGTTGGAGGGCACATGTGTCAATACCCGATGAGATCGAGCAGGAGTTCCACTTCATGAATGTGAAGCGGGCTATGCTCATTTGTCGGGTAATTGTAGGCCGGGTTGGGTCGTATTTGGATGAAGTCAATAAAGAGGATGGAGGGTTTGATTCACAGATTGCGCGCGGTGGGAGTGGAGTTTACACCAGGCTTGACGACGAGGAGTTGTTAGTGTTTAATCCTAGGGCTGTGCTTCCTTGTTTTGTGATTGTGTATAGTGTGTAA 1125 0.4782 MATIATFFNKFLSLLLILFVHLGCFIFTKQENPPSKKRKSSSLSLSHTKFKTQKAISSSWHFIKHLFSSKSSKTKNTTLSSPQSTTTAIQSLISGGSSQAHQEFDFPDPPRRKRTGSGSCSESDISADNNHFLRNDIFPCTVCGEVFHKLNLLDQHQTTKHAVSDLAGSDPGHNIVQIIFKSGWPETRILPVITRILKIHNSRKILSKFEDYRERVKAKAARNMTRFRDERCVADGNELMRFHCSTFLCDLGLNGNSKICSQQFCNICGIIKSGFSPKLDGISTMSSSWRAHVSIPDEIEQEFHFMNVKRAMLICRVIVGRVGSYLDEVNKEDGGFDSQIARGGSGVYTRLDDEELLVFNPRAVLPCFVIVYSV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0718 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 162 IPR013087 -
Lan16g0718 374 PANTHER NUCLEIC ACID BINDING PROTEIN 3 373 - -
Lan16g0718 374 SUPERFAMILY ADP-ribosylation 165 373 - -
Lan16g0718 374 MobiDBLite consensus disorder prediction 97 124 - -
Lan16g0718 374 ProSitePatterns Zinc finger C2H2 type domain signature. 140 161 IPR013087 -
Lan16g0718 374 Gene3D - 186 374 - -
Lan16g0718 374 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0718 Lan-Chr16 10657292 10658844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0718 60 374 C2H2 Transcription Factor Family AT2G29660 52.252 1.80e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan16g0718 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0718 - - gmx:100785244 506.138