Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0686 ATGTCTTTTATTGGAACACAGCAAAAGTGTAAGACTTGTGAGAAAACTGTGTATCCTGTTGATCAGTTATCTGCTGATGGTACTGCTTATCATAAAGCATGTTTCAAGTGCTCTCACTGCAAAGGAACATTAAAGCTAAGCAACTATTCCTCGATGGAAGGTGTTCTTTATTGTAAGCCTCATTACGAGCAGCTCTTCAAGGAGACGGCTGCAAAGCTAGCTGATAAGGCAACACCTGTGCTGACAAGGTCCCCTAGTAAAGCTGCAAGCATGTTTTCTGGAACACAGGAAAAGTGTGCTACATGTGCCAAAACAGCTTATCCATTGGAAAAGGTAACAGTGGAAGGGCAGGCCTATCACAAATCATGTTTTAAGTGTTCACACGGTGGCTGTCCTATAACGCCTTCAAATTATGCAGCCCTCGAGGGTATTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAAGAGAAAGGGAGTTATAATCATCTTATTAAGTCCGCATCAATTAAACGTGCAGCAGCATCTGTTCCAGAGTCTTAA 543 0.4199 MSFIGTQQKCKTCEKTVYPVDQLSADGTAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETAAKLADKATPVLTRSPSKAASMFSGTQEKCATCAKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPES* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0686 180 ProSiteProfiles LIM domain profile. 97 157 IPR001781 -
Lan16g0686 180 CDD LIM2_SF3 99 159 - -
Lan16g0686 180 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 180 - -
Lan16g0686 180 SMART lim_4 9 61 IPR001781 -
Lan16g0686 180 SMART lim_4 98 150 IPR001781 -
Lan16g0686 180 Pfam LIM domain 10 65 IPR001781 -
Lan16g0686 180 Pfam LIM domain 99 154 IPR001781 -
Lan16g0686 180 Gene3D Cysteine Rich Protein 93 163 - -
Lan16g0686 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lan16g0686 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 70 - -
Lan16g0686 180 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lan16g0686 180 Gene3D Cysteine Rich Protein 1 80 - -
Lan16g0686 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 164 - -
Lan16g0686 180 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lan16g0686 180 PANTHER OS06G0237300 PROTEIN 1 180 IPR045268 GO:0051015
Lan16g0686 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 91 124 - -
Lan16g0686 180 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0686 Lan-Chr16 9192765 9196607 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan16g0686 LIM 4.6e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0686 K09377 - gmx:100809121 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0158 4 2535814 2538751 Lan16g0686 16 9192765 9196607 LSH