Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0662 ATGGAGCTCCTCCTCTTCTCCACGGCATTCCTCCTAACATTCGCCGGTTTCGCACTCTCCGCCGAACCCTGCCCACCCTGCGGCAACACCACCGTCCCATTCCCACTAAGCACATCCTCATCATGCAACGACCCTTCCTACAAAATCCGTTGCTCTTCTTCAACCCTCTTCTTCGACACACTCAACTACTCCTACCCAATCCAATCCATAAACCCTAACACCCAACGCTTCATAATTCAACCCGCTTCGTTAATCTCCAACACATGTGTCTCCACTGATAAAATCCACCAAGGGATTCAACTAAACAACAGTCTTCCTTTCAATATCACAAGCTCCAATACCATAGTTTACTTGAACTGCACGCAATCGCTTCTCATGTCACCACTTAACTGTTCTTCCACTAGTCTCTGCCACTCTTATATAAACGGCACTGTTTCTGCGTCAGCATGTGGTGGAGAGTTATGTTGCGCGTATAGGGCTGGTGGGTCTAGTAACTCGTACATGATCAGGGTTAGAGATTCTGGGTGTAGTGCTTATTCTAGCTTTGTGAACTTGGACCCGGCTTTGCAGGTGAACCGGTGGCCTGAACCGGGGTTGGAGATTCAGTGGCTGCTGCCCAAGGAAACGGTTTGTGGGTCACAGGGGGATTGTGATACCGCAAAGTCAAGTTGTGGTGTAGACACAATGTCGGTGAATGGGATCAAGAGGTGTTTTTGTAATAGGGGGTTTGTGTGGGACCCGGTTCAAGGGGTTTGTGCTGAAGAGATGAATAAAGGCTCGACAGATAGGACCCCACTAATAGCAGGTTTAACAAGCGGGATTGGAGCATTACTCATCATTGTCATCATTGCCACTCTGCTCTACAAACGCCACAGGCGCATCCAAGAAGCGCAACAACGCCTAGCCAAAGAGCGCGAAGGAATTCTCAATGCCAGTGGTGGAGGCAGAGCAGCTAAACTTTTCACTGGCAGAGAGATAAAGAAAGCAACAAATGACTTATCCACTGACCGCCTTCTCGGCATTGGAGGCTATGGTGAAGTTTACAAGGGAATTCTTCAAGATGGCACTGTTATTGCTGTCAAATGTGCAAAACTCGGAAATGCTAAAGGCACTGATCAAATCCTCAACGAGGTTCGCATATTATGCCAAGTTAATCACCGAAACCTTGTTGGTCTACTTGGTTGTTGTGTGGAATTGGAGCAGCCTATTATGGTTTATGAGTTCATAGAGAATGGTACCCTTCTTGATCACTTGCAAGGTCAAATGCCTAATGGCCGTGGCTTACTTACTTGGACTCATCGCCTTCGAATCGCTCGCGACACAGCTGAAGGTCTTACTTACCTTCACTTCATGGCTGTGCCTCCTATATACCATAGGGATGTCAAATCCAGCAACATTCTGCTAGATATGAAACTGAATGCCAAGGTTTCGGATTTCGGGTTATCGAGGTTGGCTCAAACTGATATGAGTCATATCTCTACTTGTGCACAAGGGACTCTGGGGTACCTTGATCCTGAATACTACAGGAACTACCAATTGACTGATAAGAGTGATGTATACAGTTTCGGCGTTGTGTTACTCGAACTTTTGACAGCACAAAAGGCTATAGATTTTAACAGGGCTGCAGATGATGTGAACTTAGCAGTTTATGTGCAGCGAATGGCGCAGGAAGAAAATTTGACAGAAGTTATTGATCCAACATTGAAGAATGGAGCTACAGCTATAGAGATAGATACAATGAAGGCATTGGCATTTCTGGCATTGGGTTGTTTGGAGGAACGAAGACAGAACCGTCCTTCGATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATTAGTATTGCCACTGCAAAGGAGGTAGAGAAGTAG 1869 0.4628 MELLLFSTAFLLTFAGFALSAEPCPPCGNTTVPFPLSTSSSCNDPSYKIRCSSSTLFFDTLNYSYPIQSINPNTQRFIIQPASLISNTCVSTDKIHQGIQLNNSLPFNITSSNTIVYLNCTQSLLMSPLNCSSTSLCHSYINGTVSASACGGELCCAYRAGGSSNSYMIRVRDSGCSAYSSFVNLDPALQVNRWPEPGLEIQWLLPKETVCGSQGDCDTAKSSCGVDTMSVNGIKRCFCNRGFVWDPVQGVCAEEMNKGSTDRTPLIAGLTSGIGALLIIVIIATLLYKRHRRIQEAQQRLAKEREGILNASGGGRAAKLFTGREIKKATNDLSTDRLLGIGGYGEVYKGILQDGTVIAVKCAKLGNAKGTDQILNEVRILCQVNHRNLVGLLGCCVELEQPIMVYEFIENGTLLDHLQGQMPNGRGLLTWTHRLRIARDTAEGLTYLHFMAVPPIYHRDVKSSNILLDMKLNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRAADDVNLAVYVQRMAQEENLTEVIDPTLKNGATAIEIDTMKALAFLALGCLEERRQNRPSMKEVAEEIEYIISIATAKEVEK* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0662 622 SMART serkin_6 333 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0662 622 PANTHER OS05G0318100 PROTEIN 15 617 - -
Lan16g0662 622 Gene3D Transferase(Phosphotransferase) domain 1 409 621 - -
Lan16g0662 622 SUPERFAMILY Protein kinase-like (PK-like) 318 608 IPR011009 -
Lan16g0662 622 Gene3D Phosphorylase Kinase; domain 1 294 408 - -
Lan16g0662 622 ProSiteProfiles Protein kinase domain profile. 333 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan16g0662 622 CDD STKc_IRAK 339 609 - -
Lan16g0662 622 Pfam Wall-associated receptor kinase galacturonan-binding 24 79 IPR025287 GO:0030247
Lan16g0662 622 Pfam Protein tyrosine and serine/threonine kinase 334 607 IPR001245 GO:0004672|GO:0006468
Lan16g0662 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Lan16g0662 622 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Lan16g0662 622 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 617 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0662 Lan-Chr16 8701605 8707885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0662 24 621 Receptor kinase-like Gene Family AT5G02070 53.485 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lan16g0662 PK_Tyr_Ser-Thr 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0662 - - gmx:100305415 1014.22