Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0651 ATGGAGGAATCTGAGTACATGATTTGGATGAAGAGAAAACAAATATTGAAGTCACATATTCAAGCACCAATAGTTATAGGAGCATGCAACAACAACAACAATTCATGGGAAGAAAAGGCTTTTGCTGAAGATGCAAAGAGGATACTTGGAGGGTGCATATGGCCTCCAAGATCTTACTCATGCAATTTCTGTAAAAGAGATTTCAGGTCAGCTCAAGCCCTAGGGGGTCACATGAATGTGCACAGAAGGGATAGAGCCAGGCTCAAACAAGGTCTTAGCCCTTATCATCAAAGTAAAGAAGCCCTTCATCGTTTTCATCATTGTCAGAAAATTCACCCTAAGTCATTAAGTAATTCTCAGTTTTCTTCAGTCAATGAAAGGGAAGAAATTTTTAATGATTTGGGTTGCAATGATTATGTTGAGACAAGTTTGTCTGTGGGATTGAATTCAGTGTTTGGCCAAAAATCATCACCAAATGGTTCATGTGATGAAGAAGCCATGAGTTATAAAAGACCAAAAATTTATATTCCTTCTATGCCTGTCTTTATCAAGCCATGTTCAAAAGATAGAAGCATGGCTTTCAAGTCTGCAGAAGAATTTGTACTTGGACTTAAGCCTGGAATGGAAGACTTGGATCTTGAACTAAGGCTAGGAGAATCACAGAAAGTTAAGTAG 675 0.3822 MEESEYMIWMKRKQILKSHIQAPIVIGACNNNNNSWEEKAFAEDAKRILGGCIWPPRSYSCNFCKRDFRSAQALGGHMNVHRRDRARLKQGLSPYHQSKEALHRFHHCQKIHPKSLSNSQFSSVNEREEIFNDLGCNDYVETSLSVGLNSVFGQKSSPNGSCDEEAMSYKRPKIYIPSMPVFIKPCSKDRSMAFKSAEEFVLGLKPGMEDLDLELRLGESQKVK* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0651 224 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Lan16g0651 224 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lan16g0651 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 117 - -
Lan16g0651 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 118 223 - -
Lan16g0651 224 PANTHER OS07G0101800 PROTEIN 118 223 - -
Lan16g0651 224 PANTHER OS07G0101800 PROTEIN 1 117 - -
Lan16g0651 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Lan16g0651 224 Pfam C2H2-type zinc finger 59 83 - -
Lan16g0651 224 Gene3D Classic Zinc Finger 55 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0651 Lan-Chr16 8572694 8573861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0651 10 218 C2H2 Transcription Factor Family AT5G06070 36.287 6.64e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan16g0651 zf-C2H2_6 1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0651 - - lang:109329510 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0651 16 8572694 8573861 Lan2g1106 2 22350897 22351935 PCT
Lan16g0651 16 8572694 8573861 Lan11g0275 11 1802548 1803468 PCT