Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0645 ATGTCTTCAGGGACATCATCGTATTGGTGTTACAGTTGCAGTCGTTTCGTTAGGGTATCGAGCCAGGACACGGTGGTTTGTCCCGATTGTGACAGCGGTTTCATTGAGGGAATCGAGCAACCGGCGCGTTCTATTCACGTCGACGGACGCCGGCGACGGTTTCCCGAAACAGCGATGTATATGATTGGCCAGCGCCCAAGTTCTGATCAGAATTCTCGCCCCCTTATTCGTCGAACCCGCCACAATGGTAGTGACCGGTCACCGTTCAATCCGGTCATTGTCCTGCTCGGAAGCGGTGGTGGTTCAACGGAGGGGGCAGCTGAGCAGGACGGTGCGGAGGGTCGCGGGTTCGAGCTTTTTTATGATGATGGTGCAGGTTCTGGTCTTAGACCTTTGCCTCCTAGTATGTCTGAGTTTCTTCTTGGATCAGGAATTGATAGGCTATTAGAACAGATTTCTCAGATTGAAATCAATGGTGTTGGAAGGTATGAACACCCTCCTGCATCAAAATCTGCAATTGATTCATTACCAACAATTGAAATTGGTGAGAGTCATTTAGAATTGGAAACACATTGTGCTGTTTGTATGGAGTCTTTTGAGTTGTGCACTTCAGTTAGGGAAATGCCTTGTAAGCACATATACCATGAAGAATGTATTCTTCCATGGCTTACACTTCATAATTCGTGCCCTGTTTGTCGCCATGAATTGCCTGCTGATACTGTCCCGAGTCAGAATACACCTTTAACAAGGAATTCACCGAATTCTATTGCTTCGAACGAAAATGAGAATGATGGGTTGACTATTTGGAGGTTGCCAGGGGGAGGTTTTGCTGTAGGGAGGTTTTCTGGTGGGAGAGGAGGTGCTGAGAGAGAGCTTCCAGTTGTTTATACCGAAATGGATGGTGGTTTTAATAATGGTGGTGAACCTCGGAGGATTTCCTGGTCATCTAGAGGGAATAGAGGAGGGAGAGAGAGTAGTGGGTTCCACAGGTTTTTCCAGAATTTGTTTGGTTGCTTTAGAGGTGGTGAAGTTGGACCTCGGCATCCTACTTCAAGTACAGCGTCTCCATCCATCGGAAGGGCAAACTTGCCACGTTCCAATATGGATCCCTCTCTACGTTCGCGCAGAACTTGGTCTATGGATGGGAACAGCGGAATGAGGTTATGGTAA 1170 0.4769 MSSGTSSYWCYSCSRFVRVSSQDTVVCPDCDSGFIEGIEQPARSIHVDGRRRRFPETAMYMIGQRPSSDQNSRPLIRRTRHNGSDRSPFNPVIVLLGSGGGSTEGAAEQDGAEGRGFELFYDDGAGSGLRPLPPSMSEFLLGSGIDRLLEQISQIEINGVGRYEHPPASKSAIDSLPTIEIGESHLELETHCAVCMESFELCTSVREMPCKHIYHEECILPWLTLHNSCPVCRHELPADTVPSQNTPLTRNSPNSIASNENENDGLTIWRLPGGGFAVGRFSGGRGGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGGRESSGFHRFFQNLFGCFRGGEVGPRHPTSSTASPSIGRANLPRSNMDPSLRSRRTWSMDGNSGMRLW* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0645 389 Pfam Protein of unknown function (DUF1117) 265 355 IPR010543 -
Lan16g0645 389 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Lan16g0645 389 MobiDBLite consensus disorder prediction 348 381 - -
Lan16g0645 389 Pfam zinc-ribbon 7 37 IPR039525 GO:0061630
Lan16g0645 389 MobiDBLite consensus disorder prediction 343 389 - -
Lan16g0645 389 CDD RING-H2_RNF126_like 192 233 - -
Lan16g0645 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 239 IPR013083 -
Lan16g0645 389 SUPERFAMILY RING/U-box 172 239 - -
Lan16g0645 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 336 - -
Lan16g0645 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 336 - -
Lan16g0645 389 SMART ring_2 192 232 IPR001841 -
Lan16g0645 389 Pfam Ring finger domain 191 233 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0645 Lan-Chr16 8455070 8457165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0645 131 239 C3H Transcription Factor Family AT5G01980 41.284 5.38e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0645 - K11982 gmx:100807324 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0184 4 2995813 2997766 Lan16g0645 16 8455070 8457165 LSH